SMTL ID : 4f9c.1

Human CDC7 kinase in complex with DBF4 and XL413

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 0SX: 8-chloro-2-[(2S)-pyrrolidin-2-yl][1]benzofuro[3,2-d]pyrimidin-4(3H)-one(Non-covalent)

0SX.1: 15 residues within 4Å: Chain A: E.31, G.32, S.35, V.37, A.53, K.55, M.83, M.99, P.100, Y.101, L.102, N.147, L.149, V.160, D.161 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.37, A:A.53 Hydrogen bonds: A:N.147, A:D.161 Water bridges: A:N.147, A:D.161, A:F.162 Halogen bonds: A:L.102

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.90, C.93, H.103, H.109 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.90, B:C.93, B:H.103, B:H.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hughes, S. et al., Crystal structure of human CDC7 kinase in complex with its activator DBF4. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-10-31

Peptides

Cell division cycle 7-related protein kinase: A
Protein DBF4 homolog A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cell division cycle 7-related protein kinase

Protein DBF4 homolog A

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