SMTL ID : 4fay.1

Crystal structure of a trimeric bacterial microcompartment shell protein PduB with glycerol metabolites

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-trimer

Ligands

17 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: W.100, G.209, T.210, S.211 Chain C: F.212 Ligand excluded by PLIP GOL.2: 7 residues within 4Å: Chain A: A.77, G.78, H.110, E.151, T.210, E.215 Ligands: GOL.3 Ligand excluded by PLIP GOL.3: 11 residues within 4Å: Chain A: G.76, A.77, G.78, P.79, T.104, G.109, H.110, E.151, E.215 Ligands: GOL.2, GOL.4 Ligand excluded by PLIP GOL.4: 7 residues within 4Å: Chain A: T.75, T.104, G.107, V.142, N.144, H.149 Ligands: GOL.3 Ligand excluded by PLIP GOL.5: 4 residues within 4Å: Chain A: D.57, K.58, L.59, H.60 Ligand excluded by PLIP GOL.6: 10 residues within 4Å: Chain A: R.102, D.103, G.106, G.107 Chain B: R.102, D.103, G.106 Chain C: R.102, D.103, G.106 Ligand excluded by PLIP GOL.7: 4 residues within 4Å: Chain A: L.193, K.194, A.196, G.197 Ligand excluded by PLIP GOL.8: 5 residues within 4Å: Chain A: F.212 Chain B: W.100, G.209, T.210, S.211 Ligand excluded by PLIP GOL.9: 9 residues within 4Å: Chain B: A.77, G.78, W.100, H.110, E.151, T.210, S.213, E.215 Ligands: GOL.10 Ligand excluded by PLIP GOL.10: 11 residues within 4Å: Chain B: G.76, A.77, G.78, P.79, T.104, G.109, H.110, E.151, E.215 Ligands: GOL.9, GOL.11 Ligand excluded by PLIP GOL.11: 7 residues within 4Å: Chain B: T.75, T.104, G.107, V.142, N.144, H.149 Ligands: GOL.10 Ligand excluded by PLIP GOL.12: 4 residues within 4Å: Chain B: D.57, K.58, L.59, H.60 Ligand excluded by PLIP GOL.13: 5 residues within 4Å: Chain B: L.193, K.194, T.195, A.196, G.197 Ligand excluded by PLIP GOL.15: 5 residues within 4Å: Chain B: F.212 Chain C: W.100, G.209, T.210, S.211 Ligand excluded by PLIP GOL.16: 8 residues within 4Å: Chain C: A.77, G.78, W.100, H.110, E.151, T.210, E.215 Ligands: GOL.17 Ligand excluded by PLIP GOL.17: 12 residues within 4Å: Chain C: G.76, A.77, G.78, P.79, T.104, G.109, H.110, H.149, E.151, E.215 Ligands: GOL.16, GOL.18 Ligand excluded by PLIP GOL.18: 7 residues within 4Å: Chain C: T.75, T.104, G.107, V.142, N.144, H.149 Ligands: GOL.17 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.14: 3 residues within 4Å: Chain B: A.156, R.157, G.171 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.156 Salt bridges: B:R.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pang, A. et al., Substrate channels revealed in the trimeric Lactobacillus reuteri bacterial microcompartment shell protein PduB. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-11-21

Peptides

Microcompartments protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Microcompartments protein

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