SMTL ID : 4fcm.1

Crystal structure of the NTF2-like domain of human G3BP1 in complex with a peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

homo-dimer

Ligands

2 x SER- GLY- PHE- SER- PHE: Nucleoporin repeat peptide(Non-covalent)

SER-GLY-PHE-SER-PHE.1: 13 residues within 4Å: Chain A: L.13, V.14, E.17, F.18, Q.21, R.35, F.36, L.117, E.120, N.125, K.126, F.127, Y.128 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.13, A:V.14, A:E.17, A:F.18, A:F.18, A:F.36, A:L.117, A:F.127 Hydrogen bonds: A:E.120, A:E.120, A:N.125, A:K.126, A:K.126, A:F.127, A:F.127 Water bridges: A:Q.21, A:Q.61 SER-GLY-PHE-SER-PHE.2: 13 residues within 4Å: Chain B: P.9, V.14, E.17, F.18, Q.21, R.35, F.36, Y.37, Q.61, E.120, K.126, F.127, Y.128 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:P.9, B:P.9, B:V.14, B:E.17, B:E.17, B:F.18, B:F.18, B:F.36, B:F.127 Hydrogen bonds: B:Q.21, B:R.35, B:R.35, B:Q.61, B:F.127, B:F.127

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 4 residues within 4Å: Chain A: L.108, R.109, R.110, D.138 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.108, A:R.110 Water bridges: A:R.110, A:D.138, B:R.110 Salt bridges: A:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vognsen, T. et al., Crystal Structures of the Human G3BP1 NTF2-Like Domain Visualize FxFG Nup Repeat Specificity. Plos One (2013)

Release Date

2013-06-05

Peptides

Ras GTPase-activating protein-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras GTPase-activating protein-binding protein 1

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