SMTL ID : 4fe3.1

Structure of murine cytosolic 5'-nucleotidase III complexed with uridinine monophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.1: 6 residues within 4Å: Chain A: Y.59, K.62, R.63, C.64, D.139, M.141 No protein-ligand interaction detected (PLIP) BME.2: 3 residues within 4Å: Chain A: C.34, I.37, K.38 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: K.132, E.173, R.176, Q.177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.173, A:Q.177

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: D.49, N.51, D.238 Ligands: U5P.5 6 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions Metal complexes: A:D.49, A:N.51, A:D.238, U5P.5, H2O.9, H2O.9

1 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.5: 18 residues within 4Å: Chain A: D.49, F.50, N.51, T.66, H.68, N.69, K.89, E.96, W.113, Y.114, S.117, S.164, A.165, G.166, V.210, K.213, D.238 Ligands: MG.4 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.114 Hydrogen bonds: A:F.50, A:N.51, A:N.51, A:T.66, A:N.69, A:E.96, A:S.117, A:S.164, A:A.165 Water bridges: A:K.213, A:K.213 Salt bridges: A:K.213 pi-Stacking: A:H.68, A:W.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grobosky, C.L. et al., Structural Basis of Substrate Specificity and Selectivity of Murine Cytosolic 5'-Nucleotidase III. J.Mol.Biol. (2012)

Release Date

2012-08-29

Peptides

Cytosolic 5'-nucleotidase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytosolic 5'-nucleotidase 3

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