SMTL ID : 4feb.1

Crystal Structure of Htt36Q3H-EX1-X1-C2(Beta)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

38 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 1 residues within 4Å: Chain A: H.39 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.39, A:H.39 ZN.2: 1 residues within 4Å: Chain A: H.203 No protein-ligand interaction detected (PLIP) ZN.3: 2 residues within 4Å: Chain A: K.42, E.44 No protein-ligand interaction detected (PLIP) ZN.4: 3 residues within 4Å: Chain A: E.288, E.291, A.292 No protein-ligand interaction detected (PLIP) ZN.5: 3 residues within 4Å: Chain A: E.291, E.310 Ligands: ZN.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.310 ZN.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.7: 2 residues within 4Å: Chain A: E.291 Ligands: ZN.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.291 ZN.8: 1 residues within 4Å: Chain A: H.399 No protein-ligand interaction detected (PLIP) ZN.14: 2 residues within 4Å: Chain B: E.288 Ligands: ZN.25 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.288, B:E.288, H2O.4 ZN.15: 2 residues within 4Å: Chain B: E.172 Ligands: ZN.20 No protein-ligand interaction detected (PLIP) ZN.16: 3 residues within 4Å: Chain B: Y.167, K.170, D.180 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.180 ZN.17: 2 residues within 4Å: Chain B: E.291 Ligands: ZN.30 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.291, B:E.291 ZN.18: 3 residues within 4Å: Chain B: D.287, E.310 Ligands: ZN.30 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.310, B:E.310, H2O.4 ZN.19: 1 residues within 4Å: Chain B: K.256 No protein-ligand interaction detected (PLIP) ZN.20: 2 residues within 4Å: Chain B: E.172 Ligands: ZN.15 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.172, H2O.3 ZN.21: 1 residues within 4Å: Chain B: D.82 No protein-ligand interaction detected (PLIP) ZN.22: 1 residues within 4Å: Chain B: H.397 No protein-ligand interaction detected (PLIP) ZN.23: 1 residues within 4Å: Chain B: H.203 No protein-ligand interaction detected (PLIP) ZN.24: 1 residues within 4Å: Chain B: E.38 No protein-ligand interaction detected (PLIP) ZN.25: 2 residues within 4Å: Chain B: D.30 Ligands: ZN.14 No protein-ligand interaction detected (PLIP) ZN.26: 2 residues within 4Å: Chain B: D.209, I.212 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.209 ZN.27: 1 residues within 4Å: Chain B: H.397 No protein-ligand interaction detected (PLIP) ZN.28: 3 residues within 4Å: Chain B: N.205, A.206, D.207 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.207 ZN.29: 1 residues within 4Å: Chain B: H.39 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.39, B:H.39, H2O.4, H2O.4 ZN.30: 4 residues within 4Å: Chain B: E.291, E.310 Ligands: ZN.17, ZN.18 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.310, H2O.4 ZN.31: 3 residues within 4Å: Chain B: P.334, E.375, K.379 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.375 ZN.32: 1 residues within 4Å: Chain B: D.65 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.65, H2O.5, H2O.5 ZN.33: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.34: 1 residues within 4Å: Chain C: Q.400 No protein-ligand interaction detected (PLIP) ZN.35: 3 residues within 4Å: Chain C: K.26, D.30 Ligands: ZN.43 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.30 ZN.36: 2 residues within 4Å: Chain C: N.201, H.203 No protein-ligand interaction detected (PLIP) ZN.37: 3 residues within 4Å: Chain C: D.209, S.211, I.212 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.209 ZN.38: 2 residues within 4Å: Chain C: D.65, M.330 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.65 ZN.39: 2 residues within 4Å: Chain C: G.327, E.328 No protein-ligand interaction detected (PLIP) ZN.40: 1 residues within 4Å: Chain C: E.172 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.172 ZN.41: 1 residues within 4Å: Chain C: H.39 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.39, C:H.39 ZN.42: 1 residues within 4Å: Chain C: D.95 No protein-ligand interaction detected (PLIP) ZN.43: 2 residues within 4Å: Chain C: D.30 Ligands: ZN.35 No protein-ligand interaction detected (PLIP)

6 x NA: SODIUM ION(Non-functional Binders)

NA.9: 1 residues within 4Å: Chain A: E.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.172 Water bridges: A:E.172 NA.10: 6 residues within 4Å: Chain A: A.112, S.114, N.227, P.229, W.232, T.320 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.227 NA.11: 3 residues within 4Å: Chain A: D.209, S.211 Chain C: Q.402 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.209, A:S.211 NA.12: 1 residues within 4Å: Chain A: E.309 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.309, A:E.309, A:E.309 NA.13: 1 residues within 4Å: Chain A: E.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.10 NA.44: 2 residues within 4Å: Chain C: E.274, K.277 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M., Beta conformation of polyglutamine track revealed by a crystal structure of Huntingtin N-terminal region with insertion of three histidine residues. Prion (2013)

Release Date

2013-03-13

Peptides

Maltose-binding periplasmic protein,Huntingtin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Maltose-binding periplasmic protein,Huntingtin

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