SMTL ID : 4fez.1 (2 other biounits)

Inosine 5'-monophosphate dehydrogenase from Vibrio cholerae, deletion mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-tetramer

Ligands

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 9 residues within 4Å: Chain A: G.126, A.127, A.128, N.131, E.132, V.135, R.161, T.165, Y.169 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.126 Water bridges: A:N.131, A:E.132 PEG.6: 9 residues within 4Å: Chain B: G.126, A.127, A.128, N.131, E.132, V.135, R.161, T.165, Y.169 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.126 Water bridges: B:N.131, B:E.132 PEG.11: 9 residues within 4Å: Chain C: G.126, A.127, A.128, N.131, E.132, V.135, R.161, T.165, Y.169 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.126 Water bridges: C:N.131, C:E.132 PEG.16: 9 residues within 4Å: Chain D: G.126, A.127, A.128, N.131, E.132, V.135, R.161, T.165, Y.169 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.126 Water bridges: D:N.131, D:E.132

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: E.231 No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain A: K.41, R.166, G.192, V.193, S.194 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.41, A:R.166, A:R.166 Water bridges: A:K.41 EDO.7: 1 residues within 4Å: Chain B: E.231 No protein-ligand interaction detected (PLIP) EDO.8: 5 residues within 4Å: Chain B: K.41, R.166, G.192, V.193, S.194 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.41, B:R.166, B:R.166 Water bridges: B:K.41 EDO.12: 1 residues within 4Å: Chain C: E.231 No protein-ligand interaction detected (PLIP) EDO.13: 5 residues within 4Å: Chain C: K.41, R.166, G.192, V.193, S.194 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.41, C:R.166, C:R.166 Water bridges: C:K.41 EDO.17: 1 residues within 4Å: Chain D: E.231 No protein-ligand interaction detected (PLIP) EDO.18: 5 residues within 4Å: Chain D: K.41, R.166, G.192, V.193, S.194 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.41, D:R.166, D:R.166 Water bridges: D:K.41

8 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 4 residues within 4Å: Chain A: G.126, A.127, A.128, N.131 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.127, A:A.128, A:N.131, A:N.131 Water bridges: A:G.126 FMT.5: 4 residues within 4Å: Chain A: I.200, G.201, P.202, T.208 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.201 Water bridges: A:S.151, A:G.199, A:T.208 FMT.9: 4 residues within 4Å: Chain B: G.126, A.127, A.128, N.131 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.127, B:A.128, B:N.131, B:N.131 Water bridges: B:G.126 FMT.10: 4 residues within 4Å: Chain B: I.200, G.201, P.202, T.208 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.201 Water bridges: B:S.151, B:G.199, B:T.208 FMT.14: 4 residues within 4Å: Chain C: G.126, A.127, A.128, N.131 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.127, C:A.128, C:N.131, C:N.131 Water bridges: C:G.126 FMT.15: 4 residues within 4Å: Chain C: I.200, G.201, P.202, T.208 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.201 Water bridges: C:S.151, C:G.199, C:T.208 FMT.19: 4 residues within 4Å: Chain D: G.126, A.127, A.128, N.131 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:A.127, D:A.128, D:N.131, D:N.131 Water bridges: D:G.126 FMT.20: 4 residues within 4Å: Chain D: I.200, G.201, P.202, T.208 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.201 Water bridges: D:S.151, D:G.199, D:T.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Inosine 5'-monophosphate dehydrogenase from Vibrio cholerae, deletion mutant. To be Published

Release Date

2012-06-13

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Inosine-5'-monophosphate dehydrogenase

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