SMTL ID : 4ff5.1

Structure basis of a novel virulence factor GHIP a glycosyl hydrolase 25 of Streptococcus pneumoniae participating in host cell invasion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.2: 2 residues within 4Å: Chain A: E.91, K.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.102 Water bridges: A:N.92 EDO.3: 1 residues within 4Å: Chain A: D.93 No protein-ligand interaction detected (PLIP) EDO.4: 5 residues within 4Å: Chain A: S.84, G.85, T.88, I.97, G.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.97 EDO.5: 4 residues within 4Å: Chain A: Y.189, F.190 Ligands: EDO.6, EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.189 Water bridges: A:F.190 EDO.6: 4 residues within 4Å: Chain A: Y.189, E.192, E.193 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.192, A:E.192, A:E.193 EDO.7: 2 residues within 4Å: Chain A: Y.189 Ligands: EDO.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niu, S. et al., Structural basis of the novel S. pneumoniae virulence factor, GHIP, a glycosyl hydrolase 25 participating in host-cell invasion. Plos One (2013)

Release Date

2013-07-17

Peptides

Glycosyl hydrolase 25: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl hydrolase 25