- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x PGA: 2-PHOSPHOGLYCOLIC ACID(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 7 residues within 4Å:- Chain A: K.17, D.48, Y.49
- Chain B: K.17, D.48, Y.49, S.52
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:K.17, B:K.17, B:D.48, B:S.52, B:S.52
GOL.3: 4 residues within 4Å:- Chain A: E.153, V.154, K.155, D.156
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.153, A:K.155, A:D.156, A:D.156
GOL.4: 4 residues within 4Å:- Chain A: K.69, A.70, S.71, F.115
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.70, A:S.71, A:S.71
GOL.5: 7 residues within 4Å:- Chain A: Y.101, F.102, H.103
- Chain B: F.102, H.103, D.105, F.108
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.105
GOL.6: 2 residues within 4Å:- Chain A: R.26, P.238
No protein-ligand interaction detected (PLIP)GOL.7: 5 residues within 4Å:- Chain A: K.89, W.90, V.121, G.122, N.159
No protein-ligand interaction detected (PLIP)GOL.11: 10 residues within 4Å:- Chain B: N.10, K.12, H.95, E.165, G.209, G.210, L.230, V.231, G.232
- Ligands: SO4.9
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.10, B:K.12, B:E.165, B:E.165
- Water bridges: B:E.97, B:S.211
GOL.12: 5 residues within 4Å:- Chain A: H.103, D.105, F.108
- Chain B: Y.101, H.103
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:F.102, A:D.105, B:H.103
GOL.13: 5 residues within 4Å:- Chain B: V.54, K.55, K.56, P.57
- Ligands: GOL.14
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.54
GOL.14: 3 residues within 4Å:- Chain B: K.55, P.57
- Ligands: GOL.13
No protein-ligand interaction detected (PLIP)GOL.15: 4 residues within 4Å:- Chain B: E.25, N.28, T.29, K.55
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.28
- Water bridges: B:L.53
GOL.16: 4 residues within 4Å:- Chain B: S.96, E.97, S.100, I.170
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.96, B:S.100, B:S.100
- Water bridges: B:E.97
- 1 x NA: SODIUM ION(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.9: 4 residues within 4Å:- Chain B: S.211, G.232, G.233
- Ligands: GOL.11
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.233
- Water bridges: B:G.232, B:G.232, B:A.234
SO4.10: 2 residues within 4Å:- Chain B: A.30, S.31
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.31
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.17: 5 residues within 4Å:- Chain B: K.89, W.90, G.120, G.122, N.159
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.120, B:G.122
PO4.18: 4 residues within 4Å:- Chain B: K.69, A.70, S.71, F.115
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.70, B:S.71, B:S.71
PO4.19: 4 residues within 4Å:- Chain B: P.33, E.34, N.35, V.36
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.34, B:N.35, B:N.35
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hernandez-Santoyo, A. et al., Effects of a buried cysteine-to-serine mutation on yeast triosephosphate isomerase structure and stability. Int J Mol Sci (2012)
- Release Date
- 2012-08-22
- Peptides
- Triosephosphate isomerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x PGA: 2-PHOSPHOGLYCOLIC ACID(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hernandez-Santoyo, A. et al., Effects of a buried cysteine-to-serine mutation on yeast triosephosphate isomerase structure and stability. Int J Mol Sci (2012)
- Release Date
- 2012-08-22
- Peptides
- Triosephosphate isomerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B