SMTL ID : 4fhl.2 (1 other biounit)

Nucleoporin Nup37 from Schizosaccharomyces pombe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: M.4, T.5, G.390 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.5, A:T.5 Water bridges: A:G.390 SO4.11: 3 residues within 4Å: Chain B: M.4, T.5, G.390 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.5 Water bridges: B:G.390

2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.2: 6 residues within 4Å: Chain A: S.8, P.356, I.357, Q.358, L.359, L.384 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.8, A:S.8, A:Q.358 BU1.12: 6 residues within 4Å: Chain B: S.8, P.356, I.357, Q.358, L.359, L.384 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.8, B:S.8, B:Q.358

2 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.3: 11 residues within 4Å: Chain A: S.187, N.211, R.213, K.233, N.234 Chain B: S.187, N.211, R.213, K.233, N.234 Ligands: DTT.13 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:S.187, A:S.187, A:R.213, A:R.213, B:S.187, B:R.213, B:R.213 Water bridges: A:N.211, B:N.211 DTT.13: 11 residues within 4Å: Chain A: S.187, N.211, R.213, K.233, N.234 Chain B: S.187, N.211, R.213, K.233, N.234 Ligands: DTT.3 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:S.187, A:R.213, A:R.213, B:S.187, B:S.187, B:R.213, B:R.213 Water bridges: A:N.211, B:N.211

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: R.208, S.257, K.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.208, A:S.257, A:K.276 EDO.5: 5 residues within 4Å: Chain A: Y.20, T.21, L.74, H.75, D.365 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.21, A:H.75 Water bridges: A:Y.20 EDO.6: 7 residues within 4Å: Chain A: S.7, N.9, G.58, L.59, H.374, L.385, R.387 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.9, A:L.59, A:L.385 EDO.7: 4 residues within 4Å: Chain A: S.134, I.170, L.181, G.183 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.135, A:T.168 EDO.8: 6 residues within 4Å: Chain A: L.320, G.321, A.322, C.323, D.365, F.366 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.322, A:D.365 EDO.9: 6 residues within 4Å: Chain A: N.141, D.142, I.191, N.260, R.262, L.320 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.141, A:N.260 EDO.10: 7 residues within 4Å: Chain A: S.30, C.31, S.32, N.33, L.34, C.47, Y.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.33, A:L.34, A:Y.101, A:Y.101 EDO.14: 3 residues within 4Å: Chain B: R.208, S.257, K.276 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.208, B:S.257, B:K.276 EDO.15: 5 residues within 4Å: Chain B: Y.20, T.21, L.74, H.75, D.365 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.75 Water bridges: B:Y.20, B:T.21, B:T.21 EDO.16: 7 residues within 4Å: Chain B: S.7, N.9, G.58, L.59, H.374, L.385, R.387 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.9, B:L.59, B:L.385 EDO.17: 4 residues within 4Å: Chain B: S.134, I.170, L.181, G.183 2 PLIP interactions: 2 interactions with chain B Water bridges: B:G.135, B:T.168 EDO.18: 6 residues within 4Å: Chain B: L.320, G.321, A.322, C.323, D.365, F.366 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.322, B:D.365 EDO.19: 6 residues within 4Å: Chain B: N.141, D.142, I.191, N.260, R.262, L.320 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.141, B:N.260 EDO.20: 7 residues within 4Å: Chain B: S.30, C.31, S.32, N.33, L.34, C.47, Y.101 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.33, B:L.34, B:Y.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bilokapic, S. et al., Molecular basis for Nup37 and ELY5/ELYS recruitment to the nuclear pore complex. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-09-26

Peptides

NUCLEOPORIN NUP37: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NUCLEOPORIN NUP37

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