SMTL ID : 4fim.1

Crystal Structure of C-lobe of Bovine lactoferrin Complexed with celecoxib acid at 1.80 A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x LEU- GLU- ALA- CYS- ALA- PHE: C-terminal peptide from Lactotransferrin(Non-covalent)

LEU-GLU-ALA-CYS-ALA-PHE.1: 7 residues within 4Å: Chain A: D.37, I.40, V.41, Y.59, T.60, K.63, C.64 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.37, A:I.40, A:V.41, A:T.60 Hydrogen bonds: A:K.63

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 7 residues within 4Å: Chain A: Y.1, Q.23, S.24, N.27, H.272, Q.273, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain A: G.131, L.132, N.135, E.323, T.326, A.327, N.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.326, A:N.330 NAG-NAG.4: 7 residues within 4Å: Chain A: S.77, L.93, N.204, D.205, W.208, E.214, Q.244 No protein-ligand interaction detected (PLIP)

1 x FE: FE (III) ION(Non-covalent)

FE.5: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.6: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.122

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 2 residues within 4Å: Chain A: G.312, E.318 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.318, A:E.318, H2O.9 ZN.8: 1 residues within 4Å: Chain A: H.247 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.247

1 x CEL: 4-[5-(4-METHYLPHENYL)-3-(TRIFLUOROMETHYL)-1H-PYRAZOL-1-YL]BENZENESULFONAMIDE(Non-covalent)

CEL.9: 11 residues within 4Å: Chain A: T.89, E.90, G.91, V.250, P.252, P.314, E.318, Y.319, L.320, G.321, Y.324 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.90, A:V.250, A:Y.319 Hydrogen bonds: A:E.318

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 6 residues within 4Å: Chain A: W.107, N.108, S.109, L.110, Q.136, F.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.110, A:Q.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shukla, P.K. et al., Crystal Structure of C-lobe of Bovine lactoferrin Complexed with celecoxib acid at 1.80 A Resolution. To be Published

Release Date

2012-06-27

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin

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