SMTL ID : 4fio.1

Crystal Structure of Methenyltetrahydromethanopterin Cyclohydrolase from Methanobrevibacter ruminantium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

homo-trimer

Ligands

2 x EEE: ETHYL ACETATE(Non-covalent)

EEE.1: 4 residues within 4Å: Chain A: K.129, K.318, F.321 Ligands: IPA.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.318, A:F.321 Water bridges: A:K.129 Salt bridges: A:K.129, A:K.318 EEE.3: 6 residues within 4Å: Chain B: K.129, E.221, N.222, Y.225 Ligands: IPA.4, IPA.5 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.129, B:Y.225 Water bridges: B:A.130

3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 7 residues within 4Å: Chain A: I.215, R.218, E.221, N.222, N.262, V.265 Ligands: EEE.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.215, A:R.218, A:V.265 Hydrogen bonds: A:N.222 Water bridges: A:K.129, A:R.218 IPA.4: 2 residues within 4Å: Ligands: EEE.3, IPA.5 No protein-ligand interaction detected (PLIP) IPA.5: 7 residues within 4Å: Chain B: I.215, R.218, E.221, N.222, N.262 Ligands: EEE.3, IPA.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.215, B:R.218 Hydrogen bonds: B:E.221, B:N.222 Water bridges: B:R.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carbone, V. et al., The crystal structure of methenyltetrahydromethanopterin cyclohydrolase from Methanobrevibacter ruminantium. Proteins (2013)

Release Date

2013-07-24

Peptides

Methenyltetrahydromethanopterin cyclohydrolase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Methenyltetrahydromethanopterin cyclohydrolase