SMTL ID : 4fiu.1

The structure of hemagglutinin of H16 subtype influenza virus with V327G mutation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: E.172, N.174, R.246 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain B: E.172, N.174, R.246 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.246 NAG-NAG.3: 3 residues within 4Å: Chain C: E.172, N.174, R.246 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.246

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 5 residues within 4Å: Chain A: S.481, E.484, T.485, N.488, T.490 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.490 Water bridges: A:T.490 NAG.5: 4 residues within 4Å: Chain B: E.484, T.485, N.488, T.490 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.490 Water bridges: B:S.481, B:N.488, B:N.488 NAG.6: 3 residues within 4Å: Chain C: E.484, N.488, T.490 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.490

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, X. et al., Insights into Avian Influenza Virus Pathogenicity: the Hemagglutinin Precursor HA0 of Subtype H16 Has an Alpha-Helix Structure in Its Cleavage Site with Inefficient HA1/HA2 Cleavage. J.Virol. (2012)

Release Date

2012-11-21

Peptides

hemagglutinin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

hemagglutinin