SMTL ID : 4fiv.1

FIV PROTEASE COMPLEXED WITH AN INHIBITOR LP-130

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x LP1: 4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE(Non-covalent)

LP1.1: 28 residues within 4Å: Chain A: R.10, L.25, D.27, G.29, A.30, D.31, I.32, M.53, I.54, G.55, V.56, I.95, Q.96, L.98 Chain B: R.10, L.25, D.27, G.29, A.30, D.31, M.53, I.54, G.55, V.56, I.95, Q.96, L.98 Ligands: LP1.2 25 PLIP interactions: 14 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:L.25, A:A.30, A:I.32, A:V.56, A:I.95, A:Q.96, A:L.98, B:L.25, B:M.53, B:V.56, B:I.95, B:Q.96 Hydrogen bonds: A:D.31, A:D.31, A:D.31, A:I.54, A:I.54, B:D.31, B:D.31, B:I.54, B:I.54 Water bridges: A:V.56, A:V.56, B:V.56 pi-Cation interactions: B:R.10 LP1.2: 28 residues within 4Å: Chain A: R.10, L.25, D.27, G.29, A.30, D.31, M.53, I.54, G.55, V.56, I.95, Q.96, L.98 Chain B: R.10, L.25, D.27, G.29, A.30, D.31, I.32, M.53, I.54, G.55, V.56, I.95, Q.96, L.98 Ligands: LP1.1 25 PLIP interactions: 12 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:L.25, A:M.53, A:V.56, A:I.95, A:Q.96, B:L.25, B:A.30, B:I.32, B:V.56, B:I.95, B:Q.96, B:L.98 Hydrogen bonds: A:D.31, A:D.31, A:D.31, A:I.54, A:I.54, B:D.31, B:D.31, B:I.54, B:I.54 Water bridges: A:V.56, B:V.56, B:V.56 pi-Cation interactions: A:R.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kervinen, J. et al., Toward a universal inhibitor of retroviral proteases: comparative analysis of the interactions of LP-130 complexed with proteases from HIV-1, FIV, and EIAV. Protein Sci. (1998)

Release Date

1999-01-13

Peptides

FELINE IMMUNODEFICIENCY VIRUS PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

FELINE IMMUNODEFICIENCY VIRUS PROTEASE

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