SMTL ID : 4fkb.1

An Organic solvent tolerant lipase 42

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: S.58, D.61, H.81, H.87, D.238 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.61, A:D.61, A:H.87, A:D.238, A:D.238 ZN.21: 5 residues within 4Å: Chain B: S.58, D.61, H.81, H.87, D.238 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.61, B:D.61, B:H.87, B:D.238, B:D.238

21 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: E.22, E.23, M.24, F.25 Ligands: GOL.11 Ligand excluded by PLIP GOL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP GOL.8: 2 residues within 4Å: Chain A: T.353, Y.354 Ligand excluded by PLIP GOL.9: 4 residues within 4Å: Chain A: W.60, H.81, H.85, W.255 Ligand excluded by PLIP GOL.10: 6 residues within 4Å: Chain A: T.50, L.51, A.52, Q.69, Y.94, L.97 Ligand excluded by PLIP GOL.11: 8 residues within 4Å: Chain A: E.22, E.23, M.24, F.25, S.201, E.202, V.203 Ligands: GOL.2 Ligand excluded by PLIP GOL.12: 5 residues within 4Å: Chain A: E.127, G.151, H.152, H.153, N.261 Ligand excluded by PLIP GOL.13: 3 residues within 4Å: Chain A: R.303, D.310, D.311 Ligand excluded by PLIP GOL.14: 2 residues within 4Å: Chain A: F.25, A.192 Ligand excluded by PLIP GOL.27: 7 residues within 4Å: Chain B: T.50, L.51, A.52, Q.69, Y.94, L.97 Ligands: GOL.33 Ligand excluded by PLIP GOL.28: 6 residues within 4Å: Chain B: G.26, F.27, K.28, G.32, G.35, D.36 Ligand excluded by PLIP GOL.29: 6 residues within 4Å: Chain B: Y.199, T.200, E.202, R.215, Q.216, P.217 Ligand excluded by PLIP GOL.30: 5 residues within 4Å: Chain B: D.7, A.8, G.105, R.106 Ligands: CL.40 Ligand excluded by PLIP GOL.31: 5 residues within 4Å: Chain B: W.60, H.81, H.85, W.255 Ligands: GOL.36 Ligand excluded by PLIP GOL.32: 4 residues within 4Å: Chain B: Y.67, K.102, P.146, H.152 Ligand excluded by PLIP GOL.33: 6 residues within 4Å: Chain B: R.21, E.38, Y.49, T.50, L.97 Ligands: GOL.27 Ligand excluded by PLIP GOL.34: 3 residues within 4Å: Chain B: M.351, T.353, Y.354 Ligand excluded by PLIP GOL.35: 2 residues within 4Å: Chain B: R.34, R.373 Ligand excluded by PLIP GOL.36: 5 residues within 4Å: Chain B: W.60, S.130, E.132, W.255 Ligands: GOL.31 Ligand excluded by PLIP GOL.37: 6 residues within 4Å: Chain B: F.267, Y.354, F.375, R.378, L.379, Q.382 Ligand excluded by PLIP GOL.38: 3 residues within 4Å: Chain B: K.185, E.189, S.195 Ligand excluded by PLIP

9 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain A: K.329, S.332 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.329, A:S.332 Water bridges: A:G.331 NA.5: 4 residues within 4Å: Chain A: E.270, T.272, E.284 Ligands: NA.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.270, A:T.272 Water bridges: A:T.272 NA.6: 1 residues within 4Å: Ligands: NA.5 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.272 NA.7: 4 residues within 4Å: Chain A: E.202, R.214, R.215 Ligands: CL.17 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.202, A:R.215 Water bridges: A:R.215 NA.22: 2 residues within 4Å: Chain B: K.329, S.332 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.332, B:S.332 Water bridges: B:G.331 NA.23: 1 residues within 4Å: Chain B: S.369 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.369 NA.24: 3 residues within 4Å: Chain B: E.270, T.272, E.284 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.272, B:E.284 Water bridges: B:E.284 NA.25: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:N.280, B:Y.282, A:A.83 NA.26: 1 residues within 4Å: Chain B: A.192 No protein-ligand interaction detected (PLIP)

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.15: 7 residues within 4Å: Chain A: G.275, A.276, L.277, T.278, G.279, N.280, Y.282 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain A: Y.199, T.200, S.201 Ligand excluded by PLIP CL.17: 6 residues within 4Å: Chain A: E.202, F.206, R.214, R.215, Y.224 Ligands: NA.7 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain A: G.212, L.213, R.214, R.227 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain A: R.34, P.366, N.367, P.368 Ligand excluded by PLIP CL.39: 7 residues within 4Å: Chain B: G.275, A.276, L.277, T.278, G.279, N.280, Y.282 Ligand excluded by PLIP CL.40: 2 residues within 4Å: Chain B: R.106 Ligands: GOL.30 Ligand excluded by PLIP CL.41: 5 residues within 4Å: Chain B: G.212, L.213, R.214, Q.216, R.227 Ligand excluded by PLIP CL.42: 4 residues within 4Å: Chain B: R.34, P.366, N.367, P.368 Ligand excluded by PLIP CL.43: 4 residues within 4Å: Chain B: L.126, H.153, F.154, V.155 Ligand excluded by PLIP

2 x CA: CALCIUM ION(Non-covalent)

CA.20: 4 residues within 4Å: Chain A: G.286, E.360, D.365, P.366 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.286, A:E.360, A:D.365, A:P.366, H2O.10 CA.44: 4 residues within 4Å: Chain B: G.286, E.360, D.365, P.366 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:G.286, B:E.360, B:D.365, B:P.366, H2O.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zaliha, R.N. et al., An Organic solvent tolerant lipase 42. To be Published

Release Date

2013-06-19

Peptides

Thermostable organic solvent tolerant lipase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thermostable organic solvent tolerant lipase