- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-functional Binders)
MG.2: 1 residues within 4Å:- Ligands: CDP.1
No protein-ligand interaction detected (PLIP)MG.4: 1 residues within 4Å:- Ligands: CDP.3
No protein-ligand interaction detected (PLIP)MG.7: 1 residues within 4Å:- Ligands: CDP.6
No protein-ligand interaction detected (PLIP)MG.9: 1 residues within 4Å:- Ligands: CDP.8
No protein-ligand interaction detected (PLIP)MG.11: 1 residues within 4Å:- Ligands: CDP.10
No protein-ligand interaction detected (PLIP)MG.14: 1 residues within 4Å:- Ligands: CDP.13
No protein-ligand interaction detected (PLIP)- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 7 residues within 4Å:- Chain B: Q.57, H.58, I.60, S.132, R.135, E.136, F.139
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:R.135, B:E.136, B:F.139
- Hydrogen bonds: B:Q.57, B:Q.57, B:Q.57
- Water bridges: B:D.61
MPD.12: 7 residues within 4Å:- Chain E: Q.57, H.58, I.60, S.132, R.135, E.136, F.139
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:R.135, E:E.136, E:F.139
- Hydrogen bonds: E:Q.57, E:Q.57, E:Q.57
- Water bridges: E:D.61
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gardberg, A.S. et al., Crystal structure of nucleoside diphosphate kinase B from Trypanosoma brucei bound to CDP. To be Published
- Release Date
- 2012-06-27
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-functional Binders)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gardberg, A.S. et al., Crystal structure of nucleoside diphosphate kinase B from Trypanosoma brucei bound to CDP. To be Published
- Release Date
- 2012-06-27
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C