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SMTL ID : 4fl0.1
Crystal structure of ALD1 from Arabidopsis thaliana
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Non-covalent)
PLP.1:
16 residues within 4Å:
Chain A:
G.141
,
A.142
,
Q.143
,
F.166
,
Y.169
,
C.219
,
N.223
,
D.251
,
A.253
,
Y.254
,
S.281
,
S.283
,
K.284
,
R.292
Chain B:
Y.108
,
N.323
14
PLIP interactions
:
12 interactions with chain A
,
2 interactions with chain B
Hydrophobic interactions:
A:F.166
,
A:N.223
,
A:A.253
,
A:Y.254
Hydrogen bonds:
A:A.142
,
A:Q.143
,
A:N.223
,
A:S.281
,
A:S.281
,
A:S.283
,
A:K.284
,
B:Y.108
,
B:N.323
Salt bridges:
A:R.292
PLP.2:
16 residues within 4Å:
Chain A:
Y.108
,
N.323
Chain B:
G.141
,
A.142
,
Q.143
,
F.166
,
Y.169
,
C.219
,
N.223
,
D.251
,
A.253
,
Y.254
,
S.281
,
S.283
,
K.284
,
R.292
14
PLIP interactions
:
12 interactions with chain B
,
2 interactions with chain A
Hydrophobic interactions:
B:F.166
,
B:N.223
,
B:Y.254
Hydrogen bonds:
B:A.142
,
B:Q.143
,
B:N.223
,
B:Y.254
,
B:S.281
,
B:S.281
,
B:S.283
,
B:K.284
,
A:Y.108
,
A:N.323
Salt bridges:
B:R.292
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Sobolev, V. et al., Structure of ALD1, a plant-specific homologue of the universal diaminopimelate aminotransferase enzyme of lysine biosynthesis. Acta Crystallogr.,Sect.F (2013)
Release Date
2013-02-20
Peptides
Aminotransferase ALD1:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
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Aminotransferase ALD1
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