SMTL ID : 4fl0.1

Crystal structure of ALD1 from Arabidopsis thaliana

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 16 residues within 4Å: Chain A: G.141, A.142, Q.143, F.166, Y.169, C.219, N.223, D.251, A.253, Y.254, S.281, S.283, K.284, R.292 Chain B: Y.108, N.323 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.166, A:N.223, A:A.253, A:Y.254 Hydrogen bonds: A:A.142, A:Q.143, A:N.223, A:S.281, A:S.281, A:S.283, A:K.284, B:Y.108, B:N.323 Salt bridges: A:R.292 PLP.2: 16 residues within 4Å: Chain A: Y.108, N.323 Chain B: G.141, A.142, Q.143, F.166, Y.169, C.219, N.223, D.251, A.253, Y.254, S.281, S.283, K.284, R.292 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.166, B:N.223, B:Y.254 Hydrogen bonds: B:A.142, B:Q.143, B:N.223, B:Y.254, B:S.281, B:S.281, B:S.283, B:K.284, A:Y.108, A:N.323 Salt bridges: B:R.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sobolev, V. et al., Structure of ALD1, a plant-specific homologue of the universal diaminopimelate aminotransferase enzyme of lysine biosynthesis. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-02-20

Peptides

Aminotransferase ALD1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminotransferase ALD1