SMTL ID : 4fln.1

Crystal structure of plant protease Deg2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-6-2-mer

Ligands

4 x UNK- UNK- TRP- UNK: Unknown peptide(Non-covalent)

UNK-UNK-TRP-UNK.1: 9 residues within 4Å: Chain A: L.255, G.256, V.257, L.258, L.259, E.285, R.325, I.328, R.357 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.258, A:L.258, A:L.258, A:L.259, A:E.285, A:I.328 Hydrogen bonds: A:L.255, A:G.256, A:V.257, A:V.257, A:L.259, A:L.259, A:R.357 pi-Cation interactions: A:R.357 UNK-UNK-TRP-UNK.2: 10 residues within 4Å: Chain C: C.254, L.255, G.256, V.257, L.258, L.259, E.285, R.325, I.328, R.357 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:L.258, C:L.259, C:E.285, C:R.325, C:I.328 Hydrogen bonds: C:L.255, C:G.256, C:V.257, C:L.259, C:L.259, C:R.357 pi-Cation interactions: C:R.357 UNK-UNK-TRP-UNK.3: 9 residues within 4Å: Chain E: L.255, G.256, V.257, L.258, L.259, E.285, R.325, I.328, R.357 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:L.258, E:L.258, E:L.258, E:L.259, E:E.285, E:I.328 Hydrogen bonds: E:L.255, E:G.256, E:V.257, E:V.257, E:L.259, E:L.259, E:R.357 pi-Cation interactions: E:R.357 UNK-UNK-TRP-UNK.4: 10 residues within 4Å: Chain G: C.254, L.255, G.256, V.257, L.258, L.259, E.285, R.325, I.328, R.357 12 PLIP interactions: 12 interactions with chain G Hydrophobic interactions: G:L.258, G:L.259, G:E.285, G:R.325, G:I.328 Hydrogen bonds: G:L.255, G:G.256, G:V.257, G:L.259, G:L.259, G:R.357 pi-Cation interactions: G:R.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, R. et al., Crystal structure of Arabidopsis deg2 protein reveals an internal PDZ ligand locking the hexameric resting state. J.Biol.Chem. (2012)

Release Date

2012-09-19

Peptides

Protease Do-like 2, chloroplastic: ABCEFG
Unknown peptide: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

E
A

F
B

G
C

D
E

H
E

Protease Do-like 2, chloroplastic

Unknown peptide