SMTL ID : 4flq.1

Crystal structure of Amylosucrase double mutant A289P-F290I from Neisseria polysaccharea.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 10 residues within 4Å: Chain A: D.144, Y.147, H.187, F.229, F.250, Q.254, D.286, A.287, E.328, R.509 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.187, A:Q.254, A:E.328, A:R.509 Water bridges: A:R.284, A:H.392, A:H.392, A:D.393

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: R.284, E.328, I.330, Y.349, Y.388, S.391, H.392, D.393 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.284, A:E.328, A:H.392 Water bridges: A:D.394 GOL.3: 1 residues within 4Å: Chain A: E.55 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.55 GOL.4: 3 residues within 4Å: Chain A: Y.375, R.376, D.403 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.376 Water bridges: A:D.403 GOL.5: 3 residues within 4Å: Chain A: V.50, Y.51, S.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.50, A:S.260 Water bridges: A:N.54 GOL.6: 3 residues within 4Å: Chain A: P.435, Y.438, C.445 No protein-ligand interaction detected (PLIP) GOL.7: 5 residues within 4Å: Chain A: N.89, D.91, L.94, S.95, D.552 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.94 GOL.8: 5 residues within 4Å: Chain A: H.332, F.399, D.401, E.402, R.415 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.401, A:D.401, A:E.402, A:R.415

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.9: 5 residues within 4Å: Chain A: N.54, N.207, S.260, N.261, P.262 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.54, A:N.207

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.10: 6 residues within 4Å: Chain A: L.204, F.205, F.208, W.263, R.266, A.267 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.266, A:R.266 Water bridges: A:A.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Champion, E. et al., Applying pairwise combinations of amino Acid mutations for sorting out highly efficient glucosylation tools for chemo-enzymatic synthesis of bacterial oligosaccharides. J.Am.Chem.Soc. (2012)

Release Date

2012-10-31

Peptides

Amylosucrase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Amylosucrase