SMTL ID : 4fm8.1

Crystal Structure of BACE with Compound 12a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 0UQ: (5R,7S)-1-(3-fluorophenyl)-3,7-dimethyl-8-[3-(propan-2-yloxy)benzyl]-2-thia-1,3,8-triazaspiro[4.5]decane 2,2-dioxide(Non-covalent)

0UQ.1: 18 residues within 4Å: Chain A: G.15, Q.16, G.17, L.34, D.36, Y.75, T.76, Q.77, G.78, K.79, K.111, F.112, I.114, W.119, I.122, G.234, T.235, T.236 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.34, A:Y.75, A:Y.75, A:F.112, A:I.114, A:W.119, A:I.122 Hydrogen bonds: A:T.76, A:Q.77 Water bridges: A:T.76, A:R.239 Salt bridges: A:D.36, A:D.232

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: H.400, H.402 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.400, A:H.402

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: A.46, A.47, H.49, L.52, I.106, E.108, S.109, F.113 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.46, A:A.47, A:I.106 Water bridges: A:S.109, A:S.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brodney, M.A. et al., Spirocyclic sulfamides as beta-secretase 1 (BACE-1) inhibitors for the treatment of Alzheimer's disease: utilization of structure based drug design, WaterMap, and CNS penetration studies to identify centrally efficacious inhibitors. J.Med.Chem. (2012)

Release Date

2012-10-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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