SMTL ID : 4fn6.1

Structural Characterization of Thiaminase type II TenA from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

homo-tetramer

Ligands

9 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: S.190, D.191 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.191 ACT.2: 6 residues within 4Å: Chain A: D.44, Y.113, C.137, Y.141, E.208, F.211 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.141, A:Y.141 ACT.4: 4 residues within 4Å: Chain B: K.6, Q.9, A.10, K.198 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Q.9, B:A.10 Salt bridges: B:K.198 ACT.5: 1 residues within 4Å: Chain B: D.21 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.21 ACT.9: 3 residues within 4Å: Chain B: S.190, E.193 Chain C: S.188 No protein-ligand interaction detected (PLIP) ACT.10: 2 residues within 4Å: Chain C: M.78, C.137 No protein-ligand interaction detected (PLIP) ACT.11: 5 residues within 4Å: Chain D: D.44, F.51, C.137, Y.141, E.208 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Y.141 ACT.12: 2 residues within 4Å: Chain D: R.156, E.157 No protein-ligand interaction detected (PLIP) ACT.13: 8 residues within 4Å: Chain A: H.122, S.123, R.124, E.125 Chain D: H.122, S.123, R.124, E.125 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Salt bridges: A:K.61 Hydrogen bonds: D:S.123

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: D.21, D.22, N.213, M.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.22 Water bridges: A:F.23, A:F.23 GOL.6: 11 residues within 4Å: Chain B: K.61, H.122, S.123, R.124, E.125 Chain C: K.61, A.121, H.122, S.123, R.124, E.125 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:K.61, C:A.121, C:E.125, B:K.61, B:K.61, B:E.125 GOL.7: 8 residues within 4Å: Chain C: Y.40, D.44, F.51, Y.113, C.137, Y.141, E.208, F.211 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.40, C:E.208 GOL.8: 2 residues within 4Å: Chain C: W.106 Chain D: Q.199 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Q.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Begum, A. et al., Structural Characterization of Thiaminase type II TenA from Staphylococcus aureus. TO BE PUBLISHED

Release Date

2012-12-19

Peptides

thiaminase-2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

thiaminase-2