SMTL ID : 4fnd.1

Crystal structure of the Mtb enoyl CoA isomerase in complex with hydroxyhexanoyl CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-trimer

Ligands

3 x 3H9: (S)-3-Hydroxyhexanoyl-CoA(Non-covalent)

3H9.1: 14 residues within 4Å: Chain A: K.23, V.24, G.61, F.63, D.64, L.65, L.68, I.106, A.107, N.130, E.131, I.134, M.136, P.139 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.107, A:P.139 Hydrogen bonds: A:F.63, A:D.64, A:L.65, A:N.130, A:E.131 Water bridges: A:G.61, A:F.63 3H9.4: 14 residues within 4Å: Chain B: K.23, V.24, G.61, F.63, D.64, L.65, L.68, I.106, A.107, N.130, E.131, I.134, M.136, P.139 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.107, B:P.139 Hydrogen bonds: B:F.63, B:D.64, B:L.65, B:N.130, B:E.131 Water bridges: B:G.61, B:F.63 3H9.7: 14 residues within 4Å: Chain C: K.23, V.24, G.61, F.63, D.64, L.65, L.68, I.106, A.107, N.130, E.131, I.134, M.136, P.139 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:A.107, C:P.139 Hydrogen bonds: C:F.63, C:D.64, C:L.65, C:N.130, C:E.131 Water bridges: C:G.61, C:F.63

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: R.152 Chain B: R.152 Chain C: R.152 Ligands: SO4.3, SO4.5, SO4.6, SO4.8, SO4.9 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 2 interactions with chain B Water bridges: A:R.152, B:R.152 Salt bridges: A:R.152, C:R.152, B:R.152 SO4.3: 11 residues within 4Å: Chain A: T.151, R.152 Chain B: T.151, R.152 Chain C: T.151, R.152 Ligands: SO4.2, SO4.5, SO4.6, SO4.8, SO4.9 9 PLIP interactions: 3 interactions with chain A, 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: A:R.152, C:R.152, B:R.152 Water bridges: A:S.153, C:S.153, B:S.153 Salt bridges: A:R.152, C:R.152, B:R.152 SO4.5: 8 residues within 4Å: Chain A: R.152 Chain B: R.152 Chain C: R.152 Ligands: SO4.2, SO4.3, SO4.6, SO4.8, SO4.9 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C, 2 interactions with chain B Salt bridges: A:R.152, C:R.152, B:R.152 Water bridges: C:R.152, B:R.152 SO4.6: 11 residues within 4Å: Chain A: T.151, R.152 Chain B: T.151, R.152 Chain C: T.151, R.152 Ligands: SO4.2, SO4.3, SO4.5, SO4.8, SO4.9 9 PLIP interactions: 3 interactions with chain A, 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: A:R.152, C:R.152, B:R.152 Water bridges: A:S.153, C:S.153, B:S.153 Salt bridges: A:R.152, C:R.152, B:R.152 SO4.8: 8 residues within 4Å: Chain A: R.152 Chain B: R.152 Chain C: R.152 Ligands: SO4.2, SO4.3, SO4.5, SO4.6, SO4.9 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C, 1 interactions with chain B Water bridges: A:R.152, C:R.152 Salt bridges: A:R.152, C:R.152, B:R.152 SO4.9: 11 residues within 4Å: Chain A: T.151, R.152 Chain B: T.151, R.152 Chain C: T.151, R.152 Ligands: SO4.2, SO4.3, SO4.5, SO4.6, SO4.8 9 PLIP interactions: 3 interactions with chain A, 3 interactions with chain C, 3 interactions with chain B Hydrogen bonds: A:R.152, C:R.152, B:R.152 Water bridges: A:S.153, C:S.153, B:S.153 Salt bridges: A:R.152, C:R.152, B:R.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bruning, J.B. et al., Crystal structure and mechanism of the prokaryotic enoyl CoA isomerase. To be Published

Release Date

2013-05-29

Peptides

Enoyl-CoA hydratase/isomerase family protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Enoyl-CoA hydratase/isomerase family protein

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