SMTL ID : 4frr.2 (1 other biounit)

X-ray structure of Acetylcholine binding protein from Aplysia californica in presence of 3-((S)-azetidin-2-ylmethoxy)-5-((1S,2R)-2-(2-methoxyethyl)cyclopropyl)pyridine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-pentamer

Ligands

3 x 0VC: 3-[(2S)-azetidin-2-ylmethoxy]-5-[(1S,2R)-2-(2-methoxyethyl)cyclopropyl]pyridine(Non-covalent)

0VC.1: 11 residues within 4Å: Chain A: Y.117, W.171, V.172, Y.212, C.214, C.215, Y.219 Chain E: R.103, V.132, M.140, I.142 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain A Hydrophobic interactions: E:V.132, E:I.142, A:Y.212 Water bridges: E:I.142 Hydrogen bonds: A:W.171 0VC.7: 8 residues within 4Å: Chain B: R.103, V.132, M.140, I.142 Chain C: Y.117, W.171, V.172, Y.219 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:Y.117, C:W.171 Hydrophobic interactions: B:V.132, B:I.142 Water bridges: B:I.142 0VC.12: 11 residues within 4Å: Chain D: R.103, V.132, M.140, I.142 Chain E: Y.117, W.171, V.172, Y.212, C.214, C.215, Y.219 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain E Hydrophobic interactions: D:V.132, E:Y.212 Hydrogen bonds: D:I.142, E:W.171

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: P.45, W.110, Y.173 Chain E: K.34, R.103, T.104, S.105, I.130 6 PLIP interactions: 4 interactions with chain E, 2 interactions with chain A Hydrogen bonds: E:K.34, E:T.104, E:T.104, E:S.105, A:Y.173, A:Y.173 GOL.3: 6 residues within 4Å: Chain A: Y.78, E.80, I.114, V.123, Q.145, F.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.78, A:E.80 GOL.4: 3 residues within 4Å: Chain A: Y.79 Chain B: Y.117, W.171 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.117 GOL.5: 4 residues within 4Å: Chain B: L.189, Y.192, E.199, I.200 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.200 GOL.6: 6 residues within 4Å: Chain B: E.80, Q.82, P.112, D.113, I.114, F.141 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.80, B:Q.82, B:I.114, B:I.114 GOL.8: 6 residues within 4Å: Chain C: E.80, Q.82, T.111, P.112, D.113, F.141 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Q.82, C:T.111, C:T.111 Water bridges: C:I.114, C:Q.145 GOL.9: 4 residues within 4Å: Chain D: V.123, Q.124, V.125 Chain E: P.122 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:V.125, D:V.125 GOL.10: 1 residues within 4Å: Chain D: W.171 3 PLIP interactions: 3 interactions with chain D Water bridges: D:Y.117, D:Y.117, D:S.170 GOL.11: 7 residues within 4Å: Chain C: Q.27 Chain D: Y.44, D.51, K.85, L.86, N.87, S.88 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.87, D:S.88 Water bridges: D:K.85, D:N.87 GOL.13: 6 residues within 4Å: Chain A: Y.117, M.150, K.167 Chain E: Q.62, S.191, Y.193 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain E Water bridges: A:Y.117, A:K.167, A:K.167 Hydrogen bonds: E:Q.62, E:S.191 GOL.14: 5 residues within 4Å: Chain D: K.34, R.103 Chain E: P.45, W.110, Y.173 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:K.34, D:K.34, E:Y.173, E:Y.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mukhopadhyay, S. et al., X-ray structure of Acetylcholine binding protein from Aplysia californica in presence of 3-((S)-azetidin-2-ylmethoxy)-5-((1S,2R)-2-(2-methoxyethyl)cyclopropyl)pyridine. To be Published

Release Date

2013-10-16

Peptides

Soluble acetylcholine receptor: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
H

D
I

E
J

Soluble acetylcholine receptor

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