SMTL ID : 4fry.1

The structure of a putative signal-transduction protein with CBS domains from Burkholderia ambifaria MC40-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 22 residues within 4Å: Chain A: K.16, T.22, I.23, Y.24, I.44, G.45, A.46, L.47, H.111, L.123, S.125, I.126, G.127, D.128, K.131 Chain B: R.62, M.104, T.105, R.108, M.109, R.110, I.126 21 PLIP interactions: 14 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:K.16, A:Y.24, A:G.45, A:A.46, A:A.46, A:L.48, A:S.125, A:S.125, A:S.125, A:G.127, A:K.131, B:T.105, B:R.108, B:R.108, B:R.108 Water bridges: A:G.43, B:R.62 Salt bridges: A:H.111, A:H.111, B:R.62, B:R.110 NAD.3: 23 residues within 4Å: Chain A: R.62, M.104, T.105, R.108, M.109, R.110, I.126 Chain B: K.16, T.22, I.23, Y.24, I.44, G.45, A.46, L.47, L.48, H.111, L.123, S.125, I.126, G.127, D.128, K.131 21 PLIP interactions: 6 interactions with chain A, 15 interactions with chain B Hydrogen bonds: A:T.105, A:R.108, A:R.108, B:K.16, B:Y.24, B:Y.24, B:G.45, B:A.46, B:L.48, B:S.125, B:G.127, B:D.128, B:K.131 Water bridges: A:R.62, B:G.43, B:D.128, B:K.131 Salt bridges: A:R.62, A:R.110, B:H.111, B:H.111

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 13 residues within 4Å: Chain A: I.58, T.60, R.62, D.63, T.85, K.87, V.88, R.89, R.108, M.109, R.110, H.111, P.113 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.63, A:T.85, A:R.89, A:R.89, A:R.110 Water bridges: A:G.45, A:D.63, A:K.67, A:R.110 Salt bridges: A:R.110, A:H.111 AMP.4: 13 residues within 4Å: Chain B: I.58, T.60, R.62, D.63, T.85, K.87, V.88, R.89, R.108, M.109, R.110, H.111, P.113 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.60, B:D.63, B:T.85, B:T.85, B:R.89, B:R.89, B:R.110 Salt bridges: B:R.110, B:H.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-07-11

Peptides

Putative signal-transduction protein with CBS domains: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative signal-transduction protein with CBS domains