SMTL ID : 4fu7.1

Crystal Structure of the Urokinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.95, T.178, K.180, M.181 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.178 Water bridges: A:N.96, A:K.180 Salt bridges: A:H.95, A:K.180 SO4.2: 3 residues within 4Å: Chain A: Y.126, R.233, H.236 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.233, A:H.236 SO4.3: 7 residues within 4Å: Chain A: V.30, C.31, H.46, Q.195, G.196, S.198 Ligands: 1UP.5 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.195, A:G.196, A:D.197, A:S.198, A:S.198 Water bridges: A:V.30, A:H.46, A:Y.150 Salt bridges: A:H.46

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: V.27, Y.60, R.63, L.66, N.67 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.27, A:Y.60 Hydrogen bonds: A:Y.60 Salt bridges: A:R.63

1 x 1UP: 2-[(7-carbamimidoyl-2-methoxynaphthalen-1-yl)oxy]acetamide(Non-covalent)

1UP.5: 14 residues within 4Å: Chain A: D.192, S.193, C.194, Q.195, S.198, V.216, S.217, W.218, G.219, R.220, G.221, C.222, G.229 Ligands: SO4.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.216 Hydrogen bonds: A:S.193, A:S.193, A:Q.195, A:R.220, A:G.221, A:G.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the Urokinase. to be published

Release Date

2012-08-22

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Urokinase-type plasminogen activator

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