SMTL ID : 4fu8.1

Crystal Structure of the Urokinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 2UP: naphthalene-2-carboximidamide(Non-covalent)

2UP.1: 13 residues within 4Å: Chain A: D.192, S.193, C.194, Q.195, S.198, V.216, S.217, W.218, G.219, G.221, C.222, G.229 Ligands: ACT.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.195, A:Q.195, A:V.216 Hydrogen bonds: A:D.192, A:S.193, A:S.193 Water bridges: A:D.192

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: H.46, Y.150, Q.195, G.196, S.198 Ligands: 2UP.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.195 Hydrogen bonds: A:G.196, A:S.198 Salt bridges: A:H.46 ACT.4: 4 residues within 4Å: Chain A: R.20, H.22, R.23, Y.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.51 Salt bridges: A:R.20, A:H.22

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.3: 4 residues within 4Å: Chain A: A.89, D.90, T.91 Ligands: SO4.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.90, A:T.91, A:T.91

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: H.95, T.178, K.180, M.181 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.178 Water bridges: A:N.96, A:N.96 Salt bridges: A:H.95, A:K.180 SO4.6: 3 residues within 4Å: Chain A: Y.126, R.233, H.236 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.233, A:R.233 Salt bridges: A:R.233, A:H.236 SO4.7: 3 residues within 4Å: Chain A: N.96, K.180, H.236 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.180, A:H.236 SO4.8: 3 residues within 4Å: Chain A: T.91, E.176 Ligands: SIN.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.91, A:T.91, A:E.176, A:E.176 Water bridges: A:L.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the Urokinase. to be published

Release Date

2012-08-22

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Urokinase-type plasminogen activator

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