SMTL ID : 4fu9.1

Crystal Structure of the Urokinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.95, N.96, T.178, K.180, M.181 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.178, A:T.178 Water bridges: A:N.96, A:N.96 Salt bridges: A:H.95, A:K.180 SO4.2: 4 residues within 4Å: Chain A: M.125, Y.126, R.233, H.236 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.233, A:H.236 Salt bridges: A:R.233, A:H.236 SO4.3: 5 residues within 4Å: Chain A: H.84, N.96, K.180, H.236, F.237 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.84 Salt bridges: A:K.180, A:H.236

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.4: 10 residues within 4Å: Chain A: V.30, C.31, H.46, C.47, Y.150, Q.195, G.196, D.197, S.198 Ligands: 675.13 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.46, A:G.196, A:S.198, A:S.198 Salt bridges: A:H.46

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: T.28, Y.29, L.66, Y.150 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.29, A:Y.150 Water bridges: A:T.28, A:T.28, A:T.28, A:Y.150, A:Q.195 GOL.6: 2 residues within 4Å: Chain A: K.75, K.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.75 Water bridges: A:K.106 GOL.7: 8 residues within 4Å: Chain A: Y.19, V.27, I.58, Y.60, R.63, L.66, N.67, K.75 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.60, A:Y.60, A:R.63, A:R.63, A:N.67 Water bridges: A:K.75 GOL.8: 3 residues within 4Å: Chain A: D.90, T.91, E.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.91, A:T.91 Water bridges: A:T.91 GOL.9: 4 residues within 4Å: Chain A: P.239, W.240, S.243, H.244 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.240 GOL.10: 4 residues within 4Å: Chain A: K.142, D.147, Y.148, Q.195 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.142, A:Q.195 Water bridges: A:S.145, A:Q.195, A:Q.195

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.11: 4 residues within 4Å: Chain A: H.164, Q.168, T.178, T.179 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.168, A:T.179, A:T.179 Water bridges: A:V.177, A:T.178 Salt bridges: A:H.164 ACT.12: 4 residues within 4Å: Chain A: R.20, H.22, R.23, Y.51 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.20, A:H.22

1 x 675: 6-[(Z)-AMINO(IMINO)METHYL]-N-PHENYL-2-NAPHTHAMIDE(Non-covalent)

675.13: 21 residues within 4Å: Chain A: H.46, D.50, H.94, D.192, S.193, C.194, Q.195, S.198, V.216, S.217, W.218, G.219, R.220, G.221, C.222, A.223, K.227, G.229, V.230, Y.231 Ligands: SIN.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Q.195, A:V.216 Hydrogen bonds: A:H.46, A:S.193, A:S.193, A:S.193, A:G.221 Water bridges: A:V.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the Urokinase. To be Published

Release Date

2012-08-22

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Urokinase-type plasminogen activator

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