SMTL ID : 4fug.1

Crystal Structure of the Urokinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 9UP: methyl (7-carbamimidoylnaphthalen-1-yl)carbamate(Non-covalent)

9UP.1: 13 residues within 4Å: Chain A: S.145, D.192, S.193, C.194, Q.195, S.198, V.216, W.218, G.219, G.221, C.222, G.229 Ligands: SO4.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Q.195, A:V.216 Hydrogen bonds: A:S.193, A:S.193, A:Q.195, A:G.219, A:G.221 Water bridges: A:D.192, A:S.193

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: H.46, Y.150, Q.195, G.196, S.198 Ligands: 9UP.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.195, A:G.196, A:S.198, A:S.198, A:S.198 Salt bridges: A:H.46 SO4.3: 4 residues within 4Å: Chain A: H.95, T.178, K.180, M.181 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.178 Water bridges: A:N.96, A:N.96, A:K.180 Salt bridges: A:H.95, A:K.180 SO4.4: 3 residues within 4Å: Chain A: Y.126, R.233, H.236 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Y.126, A:R.233 Salt bridges: A:R.233, A:H.236 SO4.5: 3 residues within 4Å: Chain A: N.96, K.180, H.236 5 PLIP interactions: 5 interactions with chain A Water bridges: A:N.96, A:H.236, A:H.236 Salt bridges: A:K.180, A:H.236

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: S.37, P.38, C.39, W.40 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.37, A:C.39 Water bridges: A:W.40 GOL.7: 5 residues within 4Å: Chain A: V.27, Y.60, R.63, L.66, N.67 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.60, A:R.63, A:R.63, A:N.67

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 2 residues within 4Å: Chain A: R.20, H.22 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.51 Salt bridges: A:R.20, A:H.22 ACT.9: 2 residues within 4Å: Chain A: R.220, K.227 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.220, A:K.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the Urokinase. to be published

Release Date

2012-08-22

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Urokinase-type plasminogen activator

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