SMTL ID : 4fui.1

Crystal Structure of the Urokinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x UI3: 7-METHOXY-8-[1-(METHYLSULFONYL)-1H-PYRAZOL-4-YL]NAPHTHALENE-2-CARBOXIMIDAMIDE(Non-covalent)

UI3.1: 14 residues within 4Å: Chain A: S.145, D.192, S.193, C.194, Q.195, S.198, V.216, S.217, W.218, G.219, G.221, C.222, G.229 Ligands: SIN.10 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.216 Hydrogen bonds: A:D.192, A:S.193, A:G.221, A:G.221, A:C.222 Water bridges: A:S.145

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: H.95, T.178, K.180, M.181 5 PLIP interactions: 5 interactions with chain A Water bridges: A:N.96, A:N.96, A:N.96 Salt bridges: A:H.95, A:K.180 SO4.3: 3 residues within 4Å: Chain A: Y.126, R.233, H.236 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.233 Salt bridges: A:R.233, A:H.236 SO4.4: 3 residues within 4Å: Chain A: N.96, K.180, H.236 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.180, A:H.236

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 1 residues within 4Å: Chain A: K.225 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.225 Water bridges: A:K.225, A:K.225 GOL.6: 3 residues within 4Å: Chain A: A.89, D.90, T.91 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.89, A:T.91 Water bridges: A:T.91, A:T.91 GOL.7: 4 residues within 4Å: Chain A: R.20, H.22, R.23, Y.51 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.20, A:R.20, A:H.22, A:R.23, A:Y.51 Water bridges: A:R.23 GOL.8: 4 residues within 4Å: Chain A: S.37, P.38, C.39, W.40 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.37, A:C.39 Water bridges: A:W.40

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 4 residues within 4Å: Chain A: R.65, L.66, N.67, E.152 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.66, A:N.67, A:N.67, A:E.152, A:E.152

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.10: 6 residues within 4Å: Chain A: H.46, Y.150, Q.195, G.196, S.198 Ligands: UI3.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.195 Hydrogen bonds: A:G.196, A:S.198, A:S.198 Water bridges: A:Y.29, A:V.30 Salt bridges: A:H.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal Structure of the Urokinase. to be published

Release Date

2012-08-22

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Urokinase-type plasminogen activator

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