- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.8: 3 residues within 4Å:- Chain A: W.560, T.561, K.564
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:W.560
- Water bridges: A:K.564, A:K.564
- Salt bridges: A:K.564
PO4.9: 4 residues within 4Å:- Chain A: Y.586, P.588, G.589, E.590
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.586, A:G.589
- Water bridges: A:Y.586, A:V.587, A:S.603
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.10: 4 residues within 4Å:- Chain A: P.470, L.473, S.474, E.547
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.470
ACT.11: 5 residues within 4Å:- Chain A: T.376, K.379, R.380, E.383, Y.420
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:T.376
- Hydrogen bonds: A:Y.420
- Salt bridges: A:R.380
ACT.12: 5 residues within 4Å:- Chain A: A.64, T.72, E.74, W.171
- Ligands: BGC-BGC.1
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:A.64, A:T.72, A:W.171
ACT.13: 5 residues within 4Å:- Chain A: T.160, Y.161, G.162
- Ligands: EDO.18, CA.26
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.366, A:R.366
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.14: 9 residues within 4Å:- Chain A: Y.317, L.318, M.319, Q.349, N.350, A.354, W.374, G.377, S.381
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.317, A:M.319, A:N.350, A:N.350
EDO.15: 7 residues within 4Å:- Chain A: Y.85, K.88, W.257, W.261, N.652, A.655
- Ligands: EDO.21
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.85, A:Y.85
- Water bridges: A:K.88
EDO.16: 7 residues within 4Å:- Chain A: P.109, Q.111, Q.114, D.165, V.166, Y.167
- Ligands: EDO.17
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.165
- Water bridges: A:Q.111
EDO.17: 7 residues within 4Å:- Chain A: Y.161, S.163, D.165, Y.167, K.282, Y.286
- Ligands: EDO.16
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.165, A:K.282, A:Y.286
EDO.18: 2 residues within 4Å:- Chain A: G.162
- Ligands: ACT.13
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.162
EDO.19: 5 residues within 4Å:- Chain A: P.122, S.123, E.150, D.151, A.155
4 PLIP interactions:4 interactions with chain A- Water bridges: A:S.123, A:E.150, A:E.150, A:A.155
EDO.20: 3 residues within 4Å:- Chain A: A.155, K.156, Q.159
No protein-ligand interaction detected (PLIP)EDO.21: 10 residues within 4Å:- Chain A: Y.85, Q.253, W.257, W.261, Q.447, E.451, F.533, N.652
- Ligands: EDO.15, EDO.22
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.253, A:Q.447, A:N.652
- Water bridges: A:N.652
EDO.22: 8 residues within 4Å:- Chain A: Y.78, L.81, R.250, Q.253, Q.447, K.529, E.645
- Ligands: EDO.21
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.253, A:Q.447, A:K.529, A:E.645
EDO.23: 7 residues within 4Å:- Chain A: A.535, E.539, P.544, Q.545, N.546, K.549, F.657
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.539, A:E.539, A:Q.545, A:Q.545
EDO.24: 4 residues within 4Å:- Chain A: F.419, Y.420, W.499, P.501
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.420
- Water bridges: A:G.421, A:G.421, A:W.499
EDO.25: 8 residues within 4Å:- Chain A: E.34, M.35, K.38, W.560, K.564, T.565, G.568, L.569
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.34, A:T.565, A:G.568
- Water bridges: A:K.38
- 1 x CA: CALCIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sukharnikov, L.O. et al., Sequence, structure, and evolution of cellulases in glycoside hydrolase family 48. J.Biol.Chem. (2012)
- Release Date
- 2012-10-17
- Peptides
- RTX toxins and related Ca2+-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sukharnikov, L.O. et al., Sequence, structure, and evolution of cellulases in glycoside hydrolase family 48. J.Biol.Chem. (2012)
- Release Date
- 2012-10-17
- Peptides
- RTX toxins and related Ca2+-binding protein: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A