SMTL ID : 4fut.1

Crystal structure of ATP bound MatB from Rhodopseudomonas palustris

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: R.8, L.185 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.8, A:R.8 GOL.2: 2 residues within 4Å: Chain A: T.368, F.372 3 PLIP interactions: 3 interactions with chain A Water bridges: A:P.365, A:D.374, A:G.376 GOL.3: 4 residues within 4Å: Chain A: A.282, R.286, P.319, G.320 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.286, A:R.286 Water bridges: A:S.416, A:S.416 GOL.4: 5 residues within 4Å: Chain A: A.325, L.326, P.327, G.328, V.329 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.325, A:G.328 Water bridges: A:S.330 GOL.5: 8 residues within 4Å: Chain A: P.204, F.231, T.251, F.252, R.255, T.485, M.486, G.487 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.251, A:R.255, A:R.255 Water bridges: A:F.231 GOL.6: 3 residues within 4Å: Chain A: V.52, G.53, R.152 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.152, A:R.152 Water bridges: A:R.55, A:D.156, A:D.156

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.7: 1 residues within 4Å: Ligands: ATP.8 No protein-ligand interaction detected (PLIP)

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.8: 20 residues within 4Å: Chain A: T.163, S.164, G.165, T.166, T.167, H.207, S.277, A.278, P.279, E.298, R.299, Y.300, G.301, M.302, T.303, V.322, D.382, I.394, R.397 Ligands: MG.7 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:T.163, A:S.164, A:S.164, A:G.165, A:T.166, A:T.166, A:T.166, A:T.167, A:S.277, A:E.298, A:E.298, A:T.303, A:T.303, A:T.303, A:D.382, A:R.397 Water bridges: A:T.163, A:T.167, A:T.167, A:L.280, A:G.301, A:R.397, A:R.397 Salt bridges: A:H.207, A:R.397 pi-Stacking: A:Y.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crosby, H.A. et al., Structure-Guided Expansion of the Substrate Range of Methylmalonyl Coenzyme A Synthetase (MatB) of Rhodopseudomonas palustris. Appl.Environ.Microbiol. (2012)

Release Date

2012-07-25

Peptides

Malonyl CoA synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Malonyl CoA synthetase