SMTL ID : 4fuu.1

Crystal structure of a leucine aminopeptidase precursor (BT_2548) from Bacteroides thetaiotaomicron VPI-5482 at 1.30 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x UNL: UNKNOWN LIGAND

UNL.1: 12 residues within 4Å: Chain A: H.102, D.127, E.159, D.160, D.201, I.248, T.249, D.250, F.275, W.279, H.280 Ligands: ZN.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.127, A:E.159, A:D.250 Water bridges: A:E.159

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: H.283, N.285, D.287, H.288 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.285, A:D.287, A:D.287 Water bridges: A:H.288 Salt bridges: A:H.283, A:H.288

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: D.127, D.160, W.279, H.280 Ligands: UNL.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.127, A:D.160, A:D.160, A:H.280

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 8 residues within 4Å: Chain A: F.210, L.211, G.245, D.246, I.248, I.267, P.268, N.269 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.211, A:L.211, A:D.246, A:N.269 Water bridges: A:D.246, A:I.267 EDO.5: 5 residues within 4Å: Chain A: G.214, Y.215, E.218, T.247 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.214, A:T.247 EDO.6: 6 residues within 4Å: Chain A: G.214, E.217, E.218, R.244, T.247 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a leucine aminopeptidase precursor (BT_2548) from Bacteroides thetaiotaomicron VPI-5482 at 1.30 A resolution. To be published

Release Date

2012-10-31

Peptides

Leucine aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine aminopeptidase

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