SMTL ID : 4fvu.1

Structural basis for the dsRNA specificity of the Lassa virus NP exonuclease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

monomer

Ligands

1 x G- G- A- G- G- G- A- G: RNA (5'-R(*GP*GP*AP*GP*GP*GP*AP*G)-3')(Non-covalent)

G-G-A-G-G-G-A-G.1: 25 residues within 4Å: Chain A: D.63, I.64, A.65, G.66, R.67, D.100, Y.103, S.104, H.105, Q.136, D.140, L.160, S.161, K.162, R.166, H.202 Ligands: C-U-C-C-C-U-C-C.2, C-U-C-C-C-U-C-C.2, C-U-C-C-C-U-C-C.2, C-U-C-C-C-U-C-C.2, C-U-C-C-C-U-C-C.2, C-U-C-C-C-U-C-C.2, C-U-C-C-C-U-C-C.2, C-U-C-C-C-U-C-C.2, MG.4 Protein-ligand interaction information (PLIP) not available

1 x C- U- C- C- C- U- C- C: RNA (5'-R(*CP*UP*CP*CP*CP*UP*CP*C)-3')(Non-covalent)

C-U-C-C-C-U-C-C.2: 13 residues within 4Å: Chain A: R.67, Q.96, Q.99, Y.103, D.139 Ligands: G-G-A-G-G-G-A-G.1, G-G-A-G-G-G-A-G.1, G-G-A-G-G-G-A-G.1, G-G-A-G-G-G-A-G.1, G-G-A-G-G-G-A-G.1, G-G-A-G-G-G-A-G.1, G-G-A-G-G-G-A-G.1, G-G-A-G-G-G-A-G.1 Protein-ligand interaction information (PLIP) not available

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: E.73, H.86, C.180, H.183, C.203 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.73, A:E.73, A:C.180, A:H.183, A:C.203

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 5 residues within 4Å: Chain A: D.63, Q.136, D.140 Ligands: G-G-A-G-G-G-A-G.1, G-G-A-G-G-G-A-G.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.63, A:Q.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hastie, K.M. et al., Structural Basis for the dsRNA Specificity of the Lassa Virus NP Exonuclease. Plos One (2012)

Release Date

2012-09-19

Peptides

Nucleoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleoprotein