SMTL ID : 4fwy.1

F33Y CuB myoglobin (F33Y L29H F43H sperm whale myoglobin) with copper bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: T.39, K.42, H.43, R.45, H.64, T.67, V.68, A.71, L.72, L.89, S.92, H.93, H.97, I.99, Y.103, L.104, I.107, F.138 20 PLIP interactions: 19 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:K.42, A:V.68, A:V.68, A:A.71, A:L.72, A:L.89, A:L.89, A:I.99, A:I.99, A:Y.103, A:F.138, A:F.138 Hydrogen bonds: A:S.92 Water bridges: A:H.64 Salt bridges: A:R.45, A:H.93, A:H.97 pi-Stacking: A:H.97 Metal complexes: A:H.93, H2O.2

5 x CU: COPPER (II) ION(Non-covalent)

CU.2: 4 residues within 4Å: Chain A: H.29, Y.33, H.43, H.64 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.29, A:H.43, A:H.64, H2O.2 CU.3: 3 residues within 4Å: Chain A: H.24, R.118, H.119 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.24, A:H.119 CU.4: 2 residues within 4Å: Chain A: H.12, D.122 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.12, A:D.122, A:D.122 CU.5: 1 residues within 4Å: Chain A: H.116 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.116, H2O.1 CU.6: 1 residues within 4Å: Chain A: H.81 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miner, K.D. et al., A Designed Functional Metalloenzyme that Reduces O(2) to H(2) O with Over One Thousand Turnovers. Angew.Chem.Int.Ed.Engl. (2012)

Release Date

2012-07-18

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin

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