- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 5 residues within 4Å:- Chain A: V.38, N.64, E.119, G.120, E.121
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.38
- Hydrogen bonds: A:N.64
NAG.4: 6 residues within 4Å:- Chain A: H.175, K.177, L.179, S.191, P.193, N.201
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.177, A:S.191, A:N.201
- Water bridges: A:T.203
NAG.5: 4 residues within 4Å:- Chain A: Y.252, N.255, P.307, K.315
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.252, A:P.307
- Hydrogen bonds: A:N.255, A:K.315
NAG.6: 4 residues within 4Å:- Chain A: P.611, T.613, L.614, N.617
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:P.611, A:L.614
- Hydrogen bonds: A:T.613, A:T.613
- Water bridges: A:N.617, A:N.617
NAG.7: 5 residues within 4Å:- Chain A: Q.434, S.438, E.459, A.460, N.463
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:E.459
- Hydrogen bonds: A:Q.434, A:N.463
NAG.8: 3 residues within 4Å:- Chain A: N.720, N.754, T.756
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.720, A:N.754
NAG.24: 5 residues within 4Å:- Chain B: V.38, N.64, E.119, G.120, E.121
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:V.38
- Hydrogen bonds: B:N.64
NAG.25: 6 residues within 4Å:- Chain B: H.175, K.177, L.179, S.191, P.193, N.201
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.177, B:S.191, B:N.201
- Water bridges: B:T.203
NAG.26: 4 residues within 4Å:- Chain B: Y.252, N.255, P.307, K.315
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.252, B:P.307
- Hydrogen bonds: B:N.255, B:K.315
NAG.27: 4 residues within 4Å:- Chain B: P.611, T.613, L.614, N.617
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:P.611, B:L.614
- Hydrogen bonds: B:T.613, B:T.613
- Water bridges: B:N.617, B:N.617
NAG.28: 5 residues within 4Å:- Chain B: Q.434, S.438, E.459, A.460, N.463
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:E.459
- Hydrogen bonds: B:Q.434, B:N.463
NAG.29: 3 residues within 4Å:- Chain B: N.720, N.754, T.756
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.720, B:N.754
- 2 x ZN: ZINC ION(Non-covalent)
ZN.9: 5 residues within 4Å:- Chain A: H.324, H.328, E.347, Y.413
- Ligands: ACY.21
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Ligand interactions- Metal complexes: A:H.324, A:H.328, A:E.347, A:E.347, ACY.21
ZN.30: 5 residues within 4Å:- Chain B: H.324, H.328, E.347, Y.413
- Ligands: ACY.42
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.324, B:H.328, B:E.347, B:E.347
- 22 x SO4: SULFATE ION(Non-functional Binders)
SO4.10: 6 residues within 4Å:- Chain A: L.67, G.70, H.71, R.72, K.88, T.89
Ligand excluded by PLIPSO4.11: 4 residues within 4Å:- Chain A: R.72, T.89, E.90, L.91
Ligand excluded by PLIPSO4.12: 1 residues within 4Å:- Chain A: R.626
Ligand excluded by PLIPSO4.13: 2 residues within 4Å:- Chain A: S.498, R.542
Ligand excluded by PLIPSO4.14: 4 residues within 4Å:- Chain A: S.311, S.313, S.730, K.763
Ligand excluded by PLIPSO4.15: 1 residues within 4Å:- Chain A: R.542
Ligand excluded by PLIPSO4.16: 4 residues within 4Å:- Chain A: N.64, Y.65, R.72, L.91
Ligand excluded by PLIPSO4.17: 5 residues within 4Å:- Chain A: Y.651, K.655, V.806
- Chain B: E.773, W.775
Ligand excluded by PLIPSO4.18: 4 residues within 4Å:- Chain A: Y.134, M.135, R.241, R.791
Ligand excluded by PLIPSO4.19: 4 residues within 4Å:- Chain A: H.586, S.587, R.594, Q.627
Ligand excluded by PLIPSO4.20: 3 residues within 4Å:- Chain A: T.899, E.900, K.903
Ligand excluded by PLIPSO4.31: 6 residues within 4Å:- Chain B: L.67, G.70, H.71, R.72, K.88, T.89
Ligand excluded by PLIPSO4.32: 4 residues within 4Å:- Chain B: R.72, T.89, E.90, L.91
Ligand excluded by PLIPSO4.33: 1 residues within 4Å:- Chain B: R.626
Ligand excluded by PLIPSO4.34: 2 residues within 4Å:- Chain B: S.498, R.542
Ligand excluded by PLIPSO4.35: 4 residues within 4Å:- Chain B: S.311, S.313, S.730, K.763
Ligand excluded by PLIPSO4.36: 1 residues within 4Å:- Chain B: R.542
Ligand excluded by PLIPSO4.37: 4 residues within 4Å:- Chain B: N.64, Y.65, R.72, L.91
Ligand excluded by PLIPSO4.38: 5 residues within 4Å:- Chain A: E.773, W.775
- Chain B: Y.651, K.655, V.806
Ligand excluded by PLIPSO4.39: 4 residues within 4Å:- Chain B: Y.134, M.135, R.241, R.791
Ligand excluded by PLIPSO4.40: 4 residues within 4Å:- Chain B: H.586, S.587, R.594, Q.627
Ligand excluded by PLIPSO4.41: 3 residues within 4Å:- Chain B: T.899, E.900, K.903
Ligand excluded by PLIP- 2 x ACY: ACETIC ACID(Non-functional Binders)
ACY.21: 8 residues within 4Å:- Chain A: A.289, E.291, H.324, E.325, H.328, E.347, Y.413
- Ligands: ZN.9
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.413
- Salt bridges: A:H.324, A:H.328
ACY.42: 8 residues within 4Å:- Chain B: A.289, E.291, H.324, E.325, H.328, E.347, Y.413
- Ligands: ZN.30
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.413, B:Y.413
- Salt bridges: B:H.324, B:H.328
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wong, A.H. et al., The X-ray Crystal Structure of Human Aminopeptidase N Reveals a Novel Dimer and the Basis for Peptide Processing. J.Biol.Chem. (2012)
- Release Date
- 2012-09-05
- Peptides
- Aminopeptidase N: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x ZN: ZINC ION(Non-covalent)
- 22 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wong, A.H. et al., The X-ray Crystal Structure of Human Aminopeptidase N Reveals a Novel Dimer and the Basis for Peptide Processing. J.Biol.Chem. (2012)
- Release Date
- 2012-09-05
- Peptides
- Aminopeptidase N: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A