- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x L2O- VAL- VAL- ASP: AMASTATIN(Non-covalent)
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 7 residues within 4Å:- Chain A: S.20, Y.21, R.22, T.44, R.46, N.170, T.207
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.46, A:R.46
NAG-NAG.3: 4 residues within 4Å:- Chain A: D.369, Q.532, L.560, N.561
No protein-ligand interaction detected (PLIP)NAG-NAG.4: 4 residues within 4Å:- Chain A: P.611, T.613, L.614, N.617
No protein-ligand interaction detected (PLIP)NAG-NAG.24: 7 residues within 4Å:- Chain B: S.20, Y.21, R.22, T.44, R.46, N.170, T.207
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.46, B:R.46
NAG-NAG.25: 4 residues within 4Å:- Chain B: D.369, Q.532, L.560, N.561
No protein-ligand interaction detected (PLIP)NAG-NAG.26: 4 residues within 4Å:- Chain B: P.611, T.613, L.614, N.617
No protein-ligand interaction detected (PLIP)- 10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 5 residues within 4Å:- Chain A: V.38, N.64, E.119, G.120, E.121
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.38
- Hydrogen bonds: A:N.64
NAG.6: 6 residues within 4Å:- Chain A: H.175, K.177, L.179, S.191, P.193, N.201
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.177, A:S.191, A:N.201
- Water bridges: A:T.203
NAG.7: 3 residues within 4Å:- Chain A: Y.252, N.255, P.307
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.252, A:P.307
- Hydrogen bonds: A:N.255, A:K.315
NAG.8: 5 residues within 4Å:- Chain A: Q.434, S.438, E.459, A.460, N.463
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:E.459
- Hydrogen bonds: A:Q.434, A:E.459, A:E.459, A:N.463
NAG.9: 2 residues within 4Å:- Chain A: N.720, N.754
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.720, A:N.754
NAG.27: 5 residues within 4Å:- Chain B: V.38, N.64, E.119, G.120, E.121
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:V.38
- Hydrogen bonds: B:N.64
NAG.28: 6 residues within 4Å:- Chain B: H.175, K.177, L.179, S.191, P.193, N.201
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.177, B:S.191, B:N.201
- Water bridges: B:T.203
NAG.29: 3 residues within 4Å:- Chain B: Y.252, N.255, P.307
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.252, B:P.307
- Hydrogen bonds: B:N.255, B:K.315
NAG.30: 5 residues within 4Å:- Chain B: Q.434, S.438, E.459, A.460, N.463
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:E.459
- Hydrogen bonds: B:Q.434, B:E.459, B:E.459, B:N.463
NAG.31: 2 residues within 4Å:- Chain B: N.720, N.754
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.720, B:N.754
- 2 x ZN: ZINC ION(Non-covalent)
ZN.10: 4 residues within 4Å:- Chain A: H.324, H.328, E.347
- Ligands: L2O-VAL-VAL-ASP.1
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.324, A:H.328, A:E.347
ZN.32: 4 residues within 4Å:- Chain B: H.324, H.328, E.347
- Ligands: L2O-VAL-VAL-ASP.23
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.324, B:H.328, B:E.347
- 24 x SO4: SULFATE ION(Non-functional Binders)
SO4.11: 6 residues within 4Å:- Chain A: L.67, G.70, H.71, R.72, K.88, T.89
Ligand excluded by PLIPSO4.12: 4 residues within 4Å:- Chain A: R.72, T.89, E.90, L.91
Ligand excluded by PLIPSO4.13: 1 residues within 4Å:- Chain A: R.626
Ligand excluded by PLIPSO4.14: 2 residues within 4Å:- Chain A: S.498, R.542
Ligand excluded by PLIPSO4.15: 5 residues within 4Å:- Chain A: S.311, S.313, N.314, S.730, K.763
Ligand excluded by PLIPSO4.16: 1 residues within 4Å:- Chain A: R.542
Ligand excluded by PLIPSO4.17: 4 residues within 4Å:- Chain A: N.64, Y.65, R.72, L.91
Ligand excluded by PLIPSO4.18: 5 residues within 4Å:- Chain A: Y.651, K.655, V.806
- Chain B: E.773, W.775
Ligand excluded by PLIPSO4.19: 3 residues within 4Å:- Chain A: N.672, P.680, E.681
Ligand excluded by PLIPSO4.20: 3 residues within 4Å:- Chain A: T.899, E.900, K.903
Ligand excluded by PLIPSO4.21: 4 residues within 4Å:- Chain A: H.586, S.587, R.594, Q.627
Ligand excluded by PLIPSO4.22: 4 residues within 4Å:- Chain A: Y.134, M.135, R.241, R.791
Ligand excluded by PLIPSO4.33: 6 residues within 4Å:- Chain B: L.67, G.70, H.71, R.72, K.88, T.89
Ligand excluded by PLIPSO4.34: 4 residues within 4Å:- Chain B: R.72, T.89, E.90, L.91
Ligand excluded by PLIPSO4.35: 1 residues within 4Å:- Chain B: R.626
Ligand excluded by PLIPSO4.36: 2 residues within 4Å:- Chain B: S.498, R.542
Ligand excluded by PLIPSO4.37: 5 residues within 4Å:- Chain B: S.311, S.313, N.314, S.730, K.763
Ligand excluded by PLIPSO4.38: 1 residues within 4Å:- Chain B: R.542
Ligand excluded by PLIPSO4.39: 4 residues within 4Å:- Chain B: N.64, Y.65, R.72, L.91
Ligand excluded by PLIPSO4.40: 5 residues within 4Å:- Chain A: E.773, W.775
- Chain B: Y.651, K.655, V.806
Ligand excluded by PLIPSO4.41: 3 residues within 4Å:- Chain B: N.672, P.680, E.681
Ligand excluded by PLIPSO4.42: 3 residues within 4Å:- Chain B: T.899, E.900, K.903
Ligand excluded by PLIPSO4.43: 4 residues within 4Å:- Chain B: H.586, S.587, R.594, Q.627
Ligand excluded by PLIPSO4.44: 4 residues within 4Å:- Chain B: Y.134, M.135, R.241, R.791
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wong, A.H. et al., The X-ray Crystal Structure of Human Aminopeptidase N Reveals a Novel Dimer and the Basis for Peptide Processing. J.Biol.Chem. (2012)
- Release Date
- 2012-09-05
- Peptides
- Aminopeptidase N: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x L2O- VAL- VAL- ASP: AMASTATIN(Non-covalent)
- 6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x ZN: ZINC ION(Non-covalent)
- 24 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wong, A.H. et al., The X-ray Crystal Structure of Human Aminopeptidase N Reveals a Novel Dimer and the Basis for Peptide Processing. J.Biol.Chem. (2012)
- Release Date
- 2012-09-05
- Peptides
- Aminopeptidase N: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A