- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.2: 7 residues within 4Å:- Chain A: Q.90, E.91, F.92, T.170, I.171, Y.172
- Chain B: V.34
2 PLIP interactions:2 interactions with chain A- pi-Cation interactions: A:F.92, A:Y.172
DMS.8: 8 residues within 4Å:- Chain C: Q.90, E.91, F.92, T.170, I.171, Y.172
- Chain D: V.34, S.35
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.170, C:Y.172
- pi-Cation interactions: C:F.92, C:Y.172
DMS.11: 8 residues within 4Å:- Chain C: V.34, S.35
- Chain D: Q.90, E.91, F.92, T.170, I.171, Y.172
2 PLIP interactions:2 interactions with chain D- pi-Cation interactions: D:F.92, D:Y.172
- 4 x 0VJ: 2-hydroxy-3-(4-methoxybenzyl)naphthalene-1,4-dione(Non-covalent)
0VJ.3: 13 residues within 4Å:- Chain A: E.91, F.92, S.93, Q.94, R.95, E.157
- Chain C: Q.80, R.83, R.187, G.191, T.192, Q.193
- Ligands: FAD.7
10 PLIP interactions:6 interactions with chain A, 4 interactions with chain C- Hydrophobic interactions: A:E.91, A:Q.94, A:Q.94, A:R.95, A:E.157, C:R.83, C:Q.193
- Hydrogen bonds: A:Q.94, C:R.187, C:R.187
0VJ.5: 13 residues within 4Å:- Chain B: Q.80, R.83, R.187, G.191, T.192, Q.193
- Chain D: E.91, F.92, S.93, Q.94, R.95, E.157
- Ligands: FAD.4
11 PLIP interactions:7 interactions with chain D, 4 interactions with chain B- Hydrophobic interactions: D:E.91, D:Q.94, D:Q.94, D:R.95, D:E.157, B:R.83, B:Q.193
- Hydrogen bonds: D:Q.94, D:R.95, B:R.187, B:R.187
0VJ.6: 13 residues within 4Å:- Chain A: Q.80, R.83, R.187, G.191, T.192, Q.193
- Chain C: E.91, F.92, S.93, Q.94, R.95, E.157
- Ligands: FAD.1
10 PLIP interactions:7 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: C:E.91, C:Q.94, C:Q.94, C:R.95, C:R.95, C:E.157, A:Q.193
- Hydrogen bonds: C:Q.94, A:R.187, A:R.187
0VJ.10: 12 residues within 4Å:- Chain B: E.91, F.92, S.93, Q.94, R.95, E.157
- Chain D: Q.80, R.83, R.187, G.191, Q.193
- Ligands: FAD.9
8 PLIP interactions:5 interactions with chain D, 3 interactions with chain B- Hydrophobic interactions: D:R.83, D:Q.193, B:E.91, B:Q.94
- Hydrogen bonds: D:Q.80, D:R.187, D:R.187, B:Q.94
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Basta, T. et al., Mechanistic and structural basis for inhibition of thymidylate synthase ThyX. Open Biology (2012)
- Release Date
- 2013-05-22
- Peptides
- Probable thymidylate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
NC
OD
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 4 x 0VJ: 2-hydroxy-3-(4-methoxybenzyl)naphthalene-1,4-dione(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Basta, T. et al., Mechanistic and structural basis for inhibition of thymidylate synthase ThyX. Open Biology (2012)
- Release Date
- 2013-05-22
- Peptides
- Probable thymidylate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
MB
NC
OD
P