SMTL ID : 4fzh.1 (2 other biounits)

Structure of the Ulster Strain Newcastle Disease Virus Hemagglutinin-Neuraminidase Reveals Auto-Inhibitory Interactions Associated with Low Virulence

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-tetramer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: Y.399, N.401 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.399 NAG-NAG.2: 3 residues within 4Å: Chain B: Y.399, N.401, T.403 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain C: Y.399, N.401, T.403 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain D: Y.399, N.401, T.403 No protein-ligand interaction detected (PLIP)

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: Y.260, N.261 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.260 NAG.6: 2 residues within 4Å: Chain A: N.353, K.354 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.353 NAG.7: 1 residues within 4Å: Chain B: N.261 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.261 NAG.8: 1 residues within 4Å: Chain B: N.353 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.353 NAG.9: 1 residues within 4Å: Chain C: N.353 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.353 NAG.10: 1 residues within 4Å: Chain D: N.261 No protein-ligand interaction detected (PLIP) NAG.11: 1 residues within 4Å: Chain D: N.353 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, P. et al., Structure of the ulster strain newcastle disease virus hemagglutinin-neuraminidase reveals auto-inhibitory interactions associated with low virulence. Plos Pathog. (2012)

Release Date

2012-09-05

Peptides

Hemagglutinin-neuraminidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Hemagglutinin-neuraminidase

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