SMTL ID : 4fzz.1

Exonuclease X in complex with 5' overhanging duplex DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: A.16, G.17 Chain D: D.6, T.7, D.85 Ligands: NA.4 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.7 Water bridges: D:D.6 NA.2: 6 residues within 4Å: Chain B: A.16, G.17 Chain C: D.6, T.7, D.85 Ligands: NA.3 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.85 NA.3: 6 residues within 4Å: Chain B: G.17 Chain C: D.6, E.8, H.134, D.139 Ligands: NA.2 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.6 NA.4: 6 residues within 4Å: Chain A: G.17 Chain D: D.6, E.8, H.134, D.139 Ligands: NA.1 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, T. et al., Recognition and processing of double-stranded DNA by ExoX, a distributive 3'-5' exonuclease. Nucleic Acids Res. (2013)

Release Date

2013-07-03

Peptides

Exodeoxyribonuclease 10: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

Exodeoxyribonuclease 10

Related Entries With Identical Sequence