SMTL ID : 4g0q.1

Crystal structure of Arabidopsis thaliana AGO1 MID domain in complex with CMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.1: 9 residues within 4Å: Chain A: N.94, Y.98, K.102, S.113, Q.114, C.115, L.117, K.135, K.139 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.94, A:Q.114, A:C.115 Water bridges: A:G.95, A:G.95, A:G.99, A:C.115, A:Y.128, A:K.135, A:K.139, A:K.139 Salt bridges: A:K.102, A:K.135, A:K.139 pi-Stacking: A:Y.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frank, F. et al., Arabidopsis Argonaute MID domains use their nucleotide specificity loop to sort small RNAs. Embo J. (2012)

Release Date

2012-07-25

Peptides

Protein argonaute 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein argonaute 1

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