SMTL ID : 4g1c.2 (2 other biounits)

Human SIRT5 bound to Succ-IDH2 and Carba-NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x ACE- ALA- VAL- SLL- CYS- ALA- NH2: Succinylated IDH2 peptide(Non-covalent)

ACE-ALA-VAL-SLL-CYS-ALA-NH2.1: 18 residues within 4Å: Chain A: A.51, Y.67, R.70, I.107, H.123, V.185, V.186, W.187, F.188, G.189, E.190, N.191, L.192, L.197, V.218, V.219, Y.220, P.221 Protein-ligand interaction information (PLIP) not available

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.131, C.134, C.172, C.177 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.131, A:C.134, A:C.172, A:C.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szczepankiewicz, B.G. et al., Synthesis of Carba-NAD and the Structures of Its Ternary Complexes with SIRT3 and SIRT5. J.Org.Chem. (2012)

Release Date

2012-08-15

Peptides

NAD-dependent protein deacylase sirtuin-5, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NAD-dependent protein deacylase sirtuin-5, mitochondrial

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