SMTL ID : 4g2n.1 (2 other biounits)

Crystal structure of putative D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding from Polaromonas sp. JS6 66

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: R.174, D.229, P.254, E.255, G.256, A.257 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.174, A:D.229, A:D.229 GOL.2: 7 residues within 4Å: Chain A: Y.147, D.150, R.151, F.307 Chain C: Y.147, D.150, R.151 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:D.150, A:D.150, C:D.150 GOL.3: 6 residues within 4Å: Chain B: R.174, D.229, P.254, E.255, G.256, A.257 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.174, B:R.174, B:D.229 GOL.5: 7 residues within 4Å: Chain C: M.169, R.174, D.229, P.254, E.255, G.256, A.257 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.174, C:R.174, C:D.229 GOL.6: 7 residues within 4Å: Chain B: Y.147, D.150, R.151, F.307 Chain D: Y.147, D.150, R.151 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:D.150, B:D.150, B:D.150 GOL.7: 5 residues within 4Å: Chain D: R.174, D.229, P.254, E.255, G.256 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.174, D:D.229

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 7 residues within 4Å: Chain B: T.316, H.317, E.318 Chain D: G.168, M.169, G.170, R.174 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain D: D.125, V.126, L.127, S.128 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of putative D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding from Polaromonas sp. JS6 66. To be Published

Release Date

2012-07-25

Peptides

D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding

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