SMTL ID : 4g2v.1

Structure complex of LGN binding with FRMPD1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Q.109, L.112, R.116, L.128, L.131, E.170 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.109, A:R.116, A:R.116, A:E.170 Water bridges: A:Q.109, A:D.113, A:D.113 GOL.2: 8 residues within 4Å: Chain A: L.82, K.86, D.120, V.122, G.123, R.126 Chain B: E.29 Ligands: GOL.10 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:E.29, A:D.120 Hydrogen bonds: A:R.126 GOL.3: 9 residues within 4Å: Chain A: V.122, A.125, R.126, N.171, V.175, D.180, A.183, R.186 Ligands: GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.125, A:R.126, A:R.126, A:N.171, A:R.186 GOL.4: 5 residues within 4Å: Chain A: D.180, A.182, A.183, R.186 Ligands: GOL.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.180, A:A.183, A:R.186, A:R.186 Water bridges: A:A.182 GOL.5: 7 residues within 4Å: Chain A: K.96, N.133, H.136, A.137, K.140 Chain B: M.23, E.24 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.24, A:A.137 GOL.6: 5 residues within 4Å: Chain A: A.182, R.211, I.214, F.218, D.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.211, A:R.211, A:I.214, A:D.220 GOL.7: 3 residues within 4Å: Chain A: K.63, E.66, Y.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.63, A:Y.67, A:Y.67 GOL.10: 6 residues within 4Å: Chain A: K.86, V.122, R.126 Chain B: E.29, T.30 Ligands: GOL.2 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.30, B:T.30, B:T.30, A:K.86

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.8: 3 residues within 4Å: Chain A: L.65, E.66, H.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.66, A:H.69 Water bridges: A:E.66 Salt bridges: A:E.66

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 1 residues within 4Å: Chain A: E.103 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pan, Z. et al., Structural and biochemical characterization of the interaction between LGN and Frmpd1. J.Mol.Biol. (2013)

Release Date

2013-01-23

Peptides

G-protein-signaling modulator 2: A
peptide from FERM and PDZ domain-containing protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

G-protein-signaling modulator 2

peptide from FERM and PDZ domain-containing protein 1

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