SMTL ID : 4g42.2 (1 other biounit)

Structure of the Chicken MHC Class I Molecule BF2*0401 complexed to pepitde P8D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-oligomer

Ligands

1 x ILE- ASP- TRP- PHE- ASP- GLY- LYS- ASP: 8-MERIC PEPTIDE P8D(Non-covalent)

ILE-ASP-TRP-PHE-ASP-GLY-LYS-ASP.1: 29 residues within 4Å: Chain A: Y.10, R.12, T.27, Y.46, Y.61, Q.65, I.68, L.71, N.72, I.75, N.76, E.78, N.79, I.82, R.83, R.86, W.98, F.100, R.114, T.143, K.146, W.147, E.152, R.155, W.156, Y.159, T.163, W.167, Y.171 37 PLIP interactions: 37 interactions with chain A Hydrophobic interactions: A:Y.10, A:Y.46, A:Y.61, A:I.68, A:L.71, A:I.75, A:I.82, A:I.82, A:Y.159, A:T.163, A:W.167 Hydrogen bonds: A:R.12, A:Y.46, A:Y.46, A:Q.65, A:Q.65, A:N.72, A:N.72, A:N.76, A:N.79, A:N.79, A:R.155, A:R.155, A:Y.171, A:Y.171 Water bridges: A:Y.10, A:R.12, A:R.83, A:K.146, A:K.146 Salt bridges: A:R.12, A:R.12, A:R.83, A:R.86, A:R.114, A:K.146 pi-Cation interactions: A:R.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Narrow Groove and Restricted Anchors of MHC Class I Molecule BF2*0401 Plus Peptide Transporter Restriction Can Explain Disease Susceptibility of B4 Chickens. J.Immunol. (2012)

Release Date

2012-11-21

Peptides

MHC class I alpha chain 2: A
Beta-2 microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

MHC class I alpha chain 2

Beta-2 microglobulin

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