SMTL ID : 4g4j.1

Crystal structure of glucuronoyl esterase S213A mutant from Sporotrichum thermophile in complex with methyl 4-O-methyl-beta-D-glucopyranuronate determined at 2.35 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x MCU: methyl 4-O-methyl-beta-D-glucopyranuronate(Non-covalent)

MCU.1: 9 residues within 4Å: Chain A: A.227, R.228, K.231, E.250, Q.273, E.281, W.324, L.325, H.360 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.228, A:K.231, A:K.231, A:Q.273, A:Q.273, A:E.281 Salt bridges: A:R.228, A:H.360

20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: V.346, P.347, N.348, N.349, Y.377 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: D.61, K.70, W.403, G.406, A.407 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain A: R.81, A.238, L.239, D.241, L.309, R.313 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: R.260, D.263, Q.264, I.296, T.297 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: Q.264, Q.265, V.328, V.395, N.396, W.400 Ligand excluded by PLIP EDO.7: 8 residues within 4Å: Chain A: F.125, S.126, A.127, T.159, F.160, N.161, E.164, F.165 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: P.152, N.154, N.376, L.380 Ligand excluded by PLIP EDO.9: 7 residues within 4Å: Chain A: R.130, I.151, P.152, S.153, V.155, A.156, T.157 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: N.55, S.56, A.57 Ligand excluded by PLIP EDO.11: 1 residues within 4Å: Chain A: S.366 Ligand excluded by PLIP EDO.12: 1 residues within 4Å: Chain A: E.104 Ligand excluded by PLIP EDO.13: 1 residues within 4Å: Chain A: D.101 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain A: V.54, N.55, S.56 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain A: P.150, N.368, N.372 Ligands: EDO.17 Ligand excluded by PLIP EDO.16: 9 residues within 4Å: Chain A: R.174, I.279, N.282, P.283, W.284, F.285, S.286, R.287, D.290 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain A: N.368, Q.369, N.372 Ligands: EDO.15 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain A: T.65, A.66, S.67, G.68 Ligands: EDO.19 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain A: P.52, V.54, A.66, P.300 Ligands: EDO.18 Ligand excluded by PLIP EDO.20: 2 residues within 4Å: Chain A: A.211, D.217 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain A: K.58, E.399, W.400 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.22: 4 residues within 4Å: Chain A: D.263, K.266, A.267, T.274 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.274 GOL.23: 3 residues within 4Å: Chain A: A.267, A.268, G.269 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Charavgi, M.D. et al., The structure of a novel glucuronoyl esterase from Myceliophthora thermophila gives new insights into its role as a potential biocatalyst. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-01-02

Peptides

4-O-methyl-glucuronoyl methylesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-O-methyl-glucuronoyl methylesterase

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