SMTL ID : 4g67.1

Crystal structure of a COG1565 superfamily member and likely methyl transferase from Burkholderia thailandensis bound to S-adenosyl-homocysteine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 15 residues within 4Å: Chain A: Y.87, Y.94, F.101, T.113, P.115, F.144, G.145, V.172, L.174, N.214, E.215, V.216, M.220, F.281 Ligands: EDO.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.101 Hydrogen bonds: A:T.113, A:G.145, A:N.214, A:N.214, A:N.214 Water bridges: A:Y.94, A:L.174, A:L.174, A:N.214

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: R.223, V.225, E.234, F.252, E.257, R.260, T.274 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.257, A:E.257, A:R.260, A:T.274, A:T.274 EDO.3: 5 residues within 4Å: Chain A: F.144, V.172, L.174, F.281 Ligands: SAH.1 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.365, R.425 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.365, A:R.425 Salt bridges: A:R.365, A:R.425 SO4.5: 1 residues within 4Å: Chain A: R.425 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.425

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-08-01

Peptides

Uncharacterized ACR, COG1565 superfamily: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized ACR, COG1565 superfamily

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