- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.2: 24 residues within 4Å:- Chain A: F.172, V.223, G.224, G.225, G.226, P.227, T.228, E.231, V.260, E.261, A.262, L.263, T.293, A.294, V.295, W.326, A.327, T.328, G.329, N.330, P.380, T.381, L.436
- Ligands: FAD.1
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:P.227, A:T.381
- Hydrogen bonds: A:G.225, A:G.226, A:E.231, A:A.262, A:V.295, A:V.295, A:N.330
- Water bridges: A:T.228, A:T.228, A:T.228, A:T.228, A:T.228, A:N.268, A:G.329, A:N.330, A:N.330, A:D.372
NAI.9: 21 residues within 4Å:- Chain B: V.223, G.224, G.226, P.227, T.228, E.231, V.260, E.261, A.262, L.263, T.293, A.294, V.295, W.326, A.327, T.328, G.329, N.330, P.380, T.381
- Ligands: FAD.10
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:P.227, B:T.381
- Hydrogen bonds: B:G.225, B:G.226, B:T.228, B:E.231, B:A.262, B:L.263, B:V.295, B:V.295, B:N.330, B:N.330
- Water bridges: B:T.228, B:T.228, B:N.268, B:N.330, B:Y.471
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 2 residues within 4Å:- Chain A: T.178, G.181
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.178, A:G.181, H2O.3, H2O.3
MG.4: 2 residues within 4Å:- Chain A: V.255, S.286
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:V.255, A:S.286, H2O.6
MG.5: 5 residues within 4Å:- Chain A: P.37, Q.38, S.40, K.42, N.44
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:P.37, A:K.42
MG.6: 1 residues within 4Å:- Chain B: E.192
No protein-ligand interaction detected (PLIP)MG.7: 1 residues within 4Å:- Chain B: G.322
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:G.322, H2O.12, H2O.12, H2O.16
MG.8: 5 residues within 4Å:- Chain B: P.123, N.126, Y.158, N.366, I.367
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:P.123, B:Y.158, H2O.19
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Feng, Y. et al., Structural insight into the type-II mitochondrial NADH dehydrogenases. Nature (2012)
- Release Date
- 2012-10-24
- Peptides
- Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Feng, Y. et al., Structural insight into the type-II mitochondrial NADH dehydrogenases. Nature (2012)
- Release Date
- 2012-10-24
- Peptides
- Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B