SMTL ID : 4g89.1

Crystal structure of k. pneumoniae mta/adohcy nucleosidase in complex with fragmented s-adenosyl-l-homocysteine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x ADE: ADENINE(Non-covalent)

ADE.1: 13 residues within 4Å: Chain A: A.82, G.83, A.155, F.156, I.157, V.176, E.177, M.178, S.201, D.202, A.204, F.212 Ligands: SAH.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.83, A:I.157, A:D.202 pi-Stacking: A:F.156

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 14 residues within 4Å: Chain A: A.13, M.14, I.55, S.81, F.156, E.177, M.178, E.179, R.198, F.212 Chain B: F.110, Y.112, P.118 Ligands: ADE.1 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:F.110 Hydrogen bonds: B:Y.112, A:E.177, A:M.178, A:E.179, A:E.179, A:R.198, A:R.198

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: G.159, S.160, L.163, D.205, Q.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.160, A:Q.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Norris, G.E. et al., Crystal structure of k. pneumoniae mta/adohcy nucleosidase in complex with fragmented s-adenosyl-l-homocysteine. To be Published

Release Date

2012-09-19

Peptides

5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase