SMTL ID : 4g9b.1

Crystal structure of beta-phosphoglucomutase homolog from escherichia coli, target efi-501172, with bound mg, open lid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 4 residues within 4Å: Chain A: D.11, D.13, E.173, D.174 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.11, A:D.13, A:D.174, H2O.1, H2O.1, H2O.1 MG.2: 5 residues within 4Å: Chain A: M.187, Q.200 Chain B: M.187, Q.200 Ligands: MG.12 No protein-ligand interaction detected (PLIP) MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.11: 4 residues within 4Å: Chain B: D.11, D.13, E.173, D.174 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.11, B:D.13, B:D.174, H2O.7, H2O.7, H2O.8 MG.12: 5 residues within 4Å: Chain A: M.187, Q.200 Chain B: M.187, Q.200 Ligands: MG.2 No protein-ligand interaction detected (PLIP) MG.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: D.11, L.12, D.13, S.118 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: A.175, Q.176 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain B: D.11, L.12, D.13, S.118 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain B: A.175, Q.176 Ligand excluded by PLIP

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: P.98, G.99, I.100, R.101, S.102 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.99, A:R.101, A:S.102, A:S.102, A:S.102 Water bridges: A:I.100, A:I.100 SO4.6: 5 residues within 4Å: Chain A: L.127, E.131, L.132, R.133, E.134 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.127, A:R.133, A:E.134 Water bridges: A:R.133, A:R.133 Salt bridges: A:R.133 SO4.7: 4 residues within 4Å: Chain A: H.23, Y.84, S.120, N.122 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.84, A:S.120, A:N.122 Water bridges: A:L.121 Salt bridges: A:H.23 SO4.15: 5 residues within 4Å: Chain B: P.98, G.99, I.100, R.101, S.102 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.99, B:R.101, B:S.102, B:S.102, B:S.102 Water bridges: B:I.100, B:I.100 SO4.16: 5 residues within 4Å: Chain B: L.127, E.131, L.132, R.133, E.134 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:L.127, B:R.133, B:E.134 Water bridges: B:R.133, B:R.133, B:E.134, B:E.134 Salt bridges: B:R.133 SO4.17: 4 residues within 4Å: Chain B: H.23, Y.84, S.120, N.122 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.84, B:Y.84, B:S.120, B:N.122 Water bridges: B:L.121 Salt bridges: B:H.23

2 x UNL: UNKNOWN LIGAND

UNL.9: 5 residues within 4Å: Chain A: L.201, R.213, A.216, F.217, N.220 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.220 Salt bridges: A:R.213 UNL.19: 5 residues within 4Å: Chain B: L.201, R.213, A.216, F.217, N.220 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.220 Salt bridges: B:R.213

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 7 residues within 4Å: Chain A: K.4, L.5, I.112, W.211, S.215, W.218, Q.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.5, A:S.215 GOL.20: 7 residues within 4Å: Chain B: K.4, L.5, I.112, W.211, S.215, W.218, Q.219 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.5, B:S.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Crystal structure of beta-phosphoglucomutase homolog from escherichia coli, target efi-501172, with bound mg, open lid. To be Published

Release Date

2012-08-15

Peptides

Beta-phosphoglucomutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Beta-phosphoglucomutase