SMTL ID : 4g9k.1

Structure of the Ndi1 protein from Saccharomyces cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 30 residues within 4Å: Chain A: G.18, S.19, G.20, W.21, G.22, I.40, S.41, P.42, R.43, T.49, P.50, L.52, P.53, E.86, A.87, A.133, V.134, G.135, L.153, T.197, R.302, V.304, G.340, D.341, P.349, T.350, A.351, Q.352, A.354, Y.440 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.52, A:P.53, A:T.197 Hydrogen bonds: A:S.19, A:S.19, A:W.21, A:G.22, A:S.41, A:R.43, A:T.49, A:T.49, A:A.87, A:A.87, A:D.341, A:P.349, A:A.351, A:Q.352 Water bridges: A:G.135 FAD.2: 30 residues within 4Å: Chain B: G.18, S.19, G.20, W.21, G.22, I.40, S.41, P.42, R.43, T.49, P.50, L.52, P.53, E.86, A.87, A.133, V.134, G.135, L.153, T.197, R.302, V.304, G.340, D.341, P.349, T.350, A.351, Q.352, A.354, Y.440 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:L.52, B:T.197 Hydrogen bonds: B:S.19, B:S.19, B:W.21, B:G.22, B:S.41, B:T.49, B:T.49, B:A.87, B:A.87, B:D.341, B:P.349, B:A.351, B:Q.352

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iwata, M. et al., The structure of the yeast NADH dehydrogenase (Ndi1) reveals overlapping binding sites for water- and lipid-soluble substrates. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-09-05

Peptides

Rotenone-insensitive NADH-ubiquinone oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rotenone-insensitive NADH-ubiquinone oxidoreductase

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